subread: new package (#4882)

var/spack/repos/builtin/packages/subread/package.py

@@ -0,0 +1,52 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import sys
+
+
+class Subread(MakefilePackage):
+    """The Subread software package is a tool kit for processing next-gen
+       sequencing data."""
+
+    homepage = "http://subread.sourceforge.net/"
+    url      = "https://downloads.sourceforge.net/project/subread/subread-1.5.2/subread-1.5.2-source.tar.gz"
+
+    version('1.5.2', '817d2a46d87fcef885c8832475b8b247')
+
+    depends_on('zlib')
+
+    def build(self, spec, prefix):
+        plat = sys.platform
+        with working_dir('src'):
+            if plat.startswith('linux'):
+                make('-f', 'Makefile.Linux')
+            elif plat.startswith('darwin'):
+                make('-f', 'Makefile.MacOS')
+            else:
+                raise InstallError("The communication mechanism %s is not"
+                                   "supported" % plat)
+
+    def install(self, spec, prefix):
+        install_tree('bin', prefix.bin)