zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Trinity plugins (#8516)

Browse Source 
* trinity: fix plugin installation

* trinity: flake8

* trinity: more specific types for dependencies
This commit is contained in:
Levi Baber 2018-07-22 17:17:44 -05:00 committed by Adam J. Stewart
parent 5acdc2e335
commit 0cef7b4355
1 changed files with 8 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
var/spack/repos/builtin/packages/trinity/package.py
View File

@ -44,14 +44,18 @@ class Trinity(MakefilePackage):
version('2.6.6', 'b7472e98ab36655a6d9296d965471a56')
depends_on("java@8:")
depends_on("java@8:", type=("build", "run"))
depends_on("bowtie2")
depends_on("jellyfish")
depends_on("salmon")
depends_on("perl+threads")
depends_on("perl+threads", type=("build", "run"))
depends_on("autoconf", type="build")
depends_on("automake", type="build")
depends_on("libtool", type="build")
def build(self, spec, prefix):
make
make()
make("trinity_essentials")
make("plugins")
def install(self, spec, prefix):
@ -73,3 +77,4 @@ def install(self, spec, prefix):
def setup_environment(self, spack_env, run_env):
run_env.set('TRINITY_HOME', self.prefix.bin)
spack_env.append_flags('CXXFLAGS', self.compiler.openmp_flag)