fastqvalidator: new package (#5573)
* fastqvalidator: new package * adding version-specificity to compiler conflict * quick changes to env vars and build phase * Update package.py * oops. forgot to install executable * Update package.py * updating package.py * turn env into targets
This commit is contained in:
parent
ba06eb72d0
commit
0fa3d8f35e
56
var/spack/repos/builtin/packages/fastqvalidator/package.py
Normal file
56
var/spack/repos/builtin/packages/fastqvalidator/package.py
Normal file
@ -0,0 +1,56 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class Fastqvalidator(MakefilePackage):
|
||||
"""The fastQValidator validates the format of fastq files."""
|
||||
|
||||
homepage = "http://genome.sph.umich.edu/wiki/FastQValidator"
|
||||
url = "https://github.com/statgen/fastQValidator/archive/v0.1.1a.tar.gz"
|
||||
|
||||
version('0.1.1a', '5c5de69527020b72b64f32987409bd12')
|
||||
|
||||
conflicts('%gcc@7:', when='@0.1.1a') # statgen/fastQValidator#14
|
||||
|
||||
resource(
|
||||
name='libStatGen',
|
||||
url='https://github.com/statgen/libStatGen/archive/v1.0.14.tar.gz',
|
||||
sha256='70a504c5cc4838c6ac96cdd010644454615cc907df4e3794c999baf958fa734b',
|
||||
)
|
||||
|
||||
@property
|
||||
def build_targets(self):
|
||||
return ['LIB_PATH_GENERAL={0}'.format(
|
||||
join_path(self.stage.source_path, 'libStatGen-1.0.14'))]
|
||||
|
||||
@property
|
||||
def install_targets(self):
|
||||
return [
|
||||
'INSTALLDIR={0}'.format(self.prefix.bin),
|
||||
'LIB_PATH_GENERAL={0}'.format(
|
||||
join_path(self.stage.source_path, 'libStatGen-1.0.14')),
|
||||
'install'
|
||||
]
|
Loading…
Reference in New Issue
Block a user