Update wgrib2 from JCSDA/NOAA-EMC fork (#32857)
* Update wgrib2 from JCSDA/NOAA-EMC fork * var/spack/repos/builtin/packages/wgrib2/package.py: fix typo in comment, add conflict for variants netcdf3, netcdf4 * wget hdf5/netcdf4 internal dependencies for wgrib2 * Black-format var/spack/repos/builtin/packages/wgrib2/package.py * More format changes in var/spack/repos/builtin/packages/wgrib2/package.py
This commit is contained in:
Dom Heinzeller
GitHub
parent
649e2d3e28
commit
10aa6bdfc1
@ -3,15 +3,17 @@
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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import re
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from spack.package import *
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class Wgrib2(CMakePackage):
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"""The wgrib2 package functionality for interacting with, reading,
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writing, and manipulating GRIB2 files."""
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class Wgrib2(MakefilePackage):
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"""Utility for interacting with GRIB2 files"""
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homepage = "https://www.cpc.ncep.noaa.gov/products/wesley/wgrib2"
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url = "https://github.com/NOAA-EMC/NCEPLIBS-wgrib2/archive/refs/tags/v2.0.8-cmake-v6.tar.gz"
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url = "https://www.ftp.cpc.ncep.noaa.gov/wd51we/wgrib2/wgrib2.tgz.v2.0.8"
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maintainers = [
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"t-brown",
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@ -21,16 +23,189 @@ class Wgrib2(CMakePackage):
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]
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version(
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"2.0.8-cmake-v6", sha256="745cd008b4ce0245ea44247733e57e2b9ec6c5205d171d457e18d0ff8f87172d"
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"3.1.1",
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sha256="9236f6afddad76d868c2cfdf5c4227f5bdda5e85ae40c18bafb37218e49bc04a",
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extension="tar.gz",
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)
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version(
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"3.1.0",
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sha256="5757ef9016b19ae87491918e0853dce2d3616b14f8c42efe3b2f41219c16b78f",
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extension="tar.gz",
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)
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version(
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"2.0.8",
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sha256="5e6a0d6807591aa2a190d35401606f7e903d5485719655aea1c4866cc2828160",
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extension="tar.gz",
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)
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version(
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"2.0.7",
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sha256="d7f1a4f9872922c62b3c7818c022465532cca1f5666b75d3ac5735f0b2747793",
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extension="tar.gz",
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)
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depends_on("ip2")
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depends_on("jasper@:2.0.32")
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depends_on("libpng")
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depends_on("netcdf-c")
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depends_on("netcdf-fortran")
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depends_on("sp")
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variant("netcdf3", default=True, description="Link in netcdf3 library to write netcdf3 files")
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variant(
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"netcdf4", default=False, description="Link in netcdf4 library to write netcdf3/4 files"
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)
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variant(
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"ipolates",
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default="3",
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description="Use to interpolate to new grids (0 = OFF, 1 = ip, 3 = ip2)",
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values=("0", "1", "3"),
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)
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variant("spectral", default=False, description="Spectral interpolation in -new_grid")
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variant(
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"fortran_api",
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default=True,
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description="Make wgrib2api which allows fortran code to read/write grib2",
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)
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variant(
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"mysql", default=False, description="Link in interface to MySQL to write to mysql database"
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)
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variant(
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"udf",
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default=False,
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description="Add commands for user-defined functions and shell commands",
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)
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variant("regex", default=True, description="Use regular expression library (POSIX-2)")
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variant("tigge", default=True, description="Ability for TIGGE-like variable names")
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variant("proj4", default=False, description="The proj4 library is used to verify gctpc.")
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variant(
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"aec", default=True, description="Use the libaec library for packing with GRIB2 template"
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)
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variant("g2c", default=False, description="Include NCEP g2clib (mainly for testing purposes)")
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variant(
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"disable_timezone", default=False, description="Some machines do not support timezones"
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)
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variant(
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"disable_alarm",
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default=False,
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description="Some machines do not support the alarm to terminate wgrib2",
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)
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variant("png", default=True, description="PNG encoding")
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variant("jasper", default=True, description="JPEG compression using Jasper")
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variant("openmp", default=True, description="OpenMP parallelization")
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variant("wmo_validation", default=False, description="WMO validation")
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def cmake_args(self):
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args = ["-DUSE_IPOLATES=3", "-DUSE_SPECTRAL=BOOL:ON"]
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return args
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conflicts("+netcdf3", when="+netcdf4")
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conflicts("+openmp", when="%apple-clang")
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depends_on("wget", type=("build"), when="+netcdf4")
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variant_map = {
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"netcdf3": "USE_NETCDF3",
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"netcdf4": "USE_NETCDF4",
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"spectral": "USE_SPECTRAL",
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"mysql": "USE_MYSQL",
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"udf": "USE_UDF",
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"regex": "USE_REGEX",
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"tigge": "USE_TIGGE",
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"proj4": "USE_PROJ4",
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"aec": "USE_AEC",
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"g2c": "USE_G2CLIB",
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"png": "USE_PNG",
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"jasper": "USE_JASPER",
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"openmp": "USE_OPENMP",
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"wmo_validation": "USE_WMO_VALIDATION",
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"ipolates": "USE_IPOLATES",
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"disable_timezone": "DISABLE_TIMEZONE",
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"disable_alarm": "DISABLE_ALARM",
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"fortran_api": "MAKE_FTN_API",
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}
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# Disable parallel build
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parallel = False
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# Use Spack compiler wrapper flags
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def inject_flags(self, name, flags):
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if name == "cflags":
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if self.spec.compiler.name == "apple-clang":
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flags.append("-Wno-error=implicit-function-declaration")
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# When mixing Clang/gfortran need to link to -lgfortran
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# Find this by searching for gfortran/../lib
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if self.spec.compiler.name in ["apple-clang", "clang"]:
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if "gfortran" in self.compiler.fc:
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output = Executable(self.compiler.fc)("-###", output=str, error=str)
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libdir = re.search("--libdir=(.+?) ", output).group(1)
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flags.append("-L{}".format(libdir))
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return (flags, None, None)
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flag_handler = inject_flags
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def url_for_version(self, version):
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url = "https://www.ftp.cpc.ncep.noaa.gov/wd51we/wgrib2/wgrib2.tgz.v{}"
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return url.format(version)
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def edit(self, spec, prefix):
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makefile = FileFilter("makefile")
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# ifort no longer accepts -openmp
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makefile.filter(r"-openmp", "-qopenmp")
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makefile.filter(r"-Wall", " ")
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makefile.filter(r"-Werror=format-security", " ")
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# clang doesn"t understand --fast-math
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if spec.satisfies("%clang") or spec.satisfies("%apple-clang"):
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makefile.filter(r"--fast-math", "-ffast-math")
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for variant_name, makefile_option in self.variant_map.items():
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value = int(spec.variants[variant_name].value)
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makefile.filter(r"^%s=.*" % makefile_option, "{}={}".format(makefile_option, value))
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def setup_build_environment(self, env):
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if self.spec.compiler.name in "intel":
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comp_sys = "intel_linux"
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elif self.spec.compiler.name in ["gcc", "clang", "apple-clang"]:
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comp_sys = "gnu_linux"
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env.set("COMP_SYS", comp_sys)
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def build(self, spec, prefix):
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# Get source files for netCDF4 builds
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if self.spec.satisfies("+netcdf4"):
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with working_dir(self.build_directory):
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os.system(
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"wget https://downloads.unidata.ucar.edu/netcdf-c/4.8.1/netcdf-c-4.8.1.tar.gz"
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)
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os.system(
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"wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.1/src/hdf5-1.12.1.tar.gz"
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)
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make()
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# Move wgrib2 executable to a tempoary directory
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mkdir("install")
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mkdir(join_path("install", "bin"))
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move(join_path("wgrib2", "wgrib2"), join_path("install", "bin"))
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# Build wgrib2 library by disabling all options
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# and enabling only MAKE_FTN_API=1
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if "+fortran_api" in spec:
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make("clean")
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make("deep-clean")
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makefile = FileFilter("makefile")
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# Disable all options
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for variant_name, makefile_option in self.variant_map.items():
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value = 0
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makefile.filter(
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r"^%s=.*" % makefile_option, "{}={}".format(makefile_option, value)
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)
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# Need USE_REGEX in addition to MAKE_FTN_API to build lib
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makefile.filter(r"^MAKE_FTN_API=.*", "MAKE_FTN_API=1")
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makefile.filter(r"^USE_REGEX=.*", "USE_REGEX=1")
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make("lib")
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mkdir(join_path("install", "lib"))
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mkdir(join_path("install", "include"))
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move(join_path("lib", "libwgrib2.a"), join_path("install", "lib"))
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move(join_path("lib", "wgrib2api.mod"), join_path("install", "include"))
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move(join_path("lib", "wgrib2lowapi.mod"), join_path("install", "include"))
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def install(self, spec, prefix):
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install_tree("install/", prefix)
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