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tetranscripts: new package @2.2.3 (#38485)

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* tetranscripts: new package @2.2.3

* tidying up

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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George Young 2023-06-21 20:43:48 +01:00 committed by GitHub
parent 69eb15936c
commit 12a22eebc7
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var/spack/repos/builtin/packages/tetranscripts/package.py Normal file
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Tetranscripts(PythonPackage):
"""TEtranscripts: Tools for estimating differential enrichment of Transposable Elements
and other highly repetitive regions."""
homepage = "https://hammelllab.labsites.cshl.edu/software/#TEtranscripts"
pypi = "TEtranscripts/TEtranscripts-2.2.3.tar.gz"
version("2.2.3", sha256="e53577e8e73e41c6495fb819977e3e537bbeac7b2fa1635029201a37ee0bf7b8")
# python dependencies
depends_on("py-setuptools", type="build")
depends_on("py-pysam@0.9:", type=("build", "run"))
# external dependencies
depends_on("r@2.15:", type="run")
depends_on("r-deseq2@1.10:", type="run")