telocal: add new package (#43241)

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>

var/spack/repos/builtin/packages/telocal/package.py

@@ -0,0 +1,21 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Telocal(PythonPackage):
+    """A package for quantifying transposable elements at a locus level for RNAseq datasets"""
+
+    homepage = "https://hammelllab.labsites.cshl.edu/software/#TElocal"
+
+    url = "https://github.com/mhammell-laboratory/TElocal/archive/refs/tags/1.1.2.tar.gz"
+
+    license("GPL-3.0-only", checked_by="A_N_Other")
+
+    version("1.1.2", sha256="d0c7d419d7df06dedbdffbf316fe01fa7324994e0fe1c4ea721835ec9b3e9bb5")
+
+    depends_on("py-setuptools", type="build")
+    depends_on("py-pysam@0.9:", type=("build", "run"))