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e4s: new packages: glvis, laghos (#42847)

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* e4s: new packages: glvis, laghos

* gl: require: osmesa

* be explicit: glvis ^llvm so that llvm-amdgpu not chosen

* glvis fails on oneapi stack due to issue 42839
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eugeneswalker 2024-02-28 09:26:53 -08:00 committed by GitHub
parent 661ae1f230
commit 13709bb7b7
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5 changed files with 14 additions and 4 deletions
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4
share/spack/gitlab/cloud_pipelines/stacks/e4s-neoverse-v2/spack.yaml
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@ -151,6 +151,7 @@ spack:
- umap - umap
- umpire - umpire
- upcxx - upcxx
- veloc
- wannier90 - wannier90
- xyce +mpi +shared +pymi +pymi_static_tpls - xyce +mpi +shared +pymi +pymi_static_tpls
# INCLUDED IN ECP DAV CPU # INCLUDED IN ECP DAV CPU
@ -165,7 +166,7 @@ spack:
- py-cinemasci - py-cinemasci
- sz - sz
- unifyfs - unifyfs
- veloc - laghos
# - visit # silo: https://github.com/spack/spack/issues/39538 # - visit # silo: https://github.com/spack/spack/issues/39538
- vtk-m - vtk-m
- zfp - zfp
@ -173,6 +174,7 @@ spack:
# - bricks ~cuda # not respecting target=aarch64? # - bricks ~cuda # not respecting target=aarch64?
# - dealii # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'. # - dealii # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'.
# - geopm # geopm: https://github.com/spack/spack/issues/38795 # - geopm # geopm: https://github.com/spack/spack/issues/38795
# - glvis # glvis: https://github.com/spack/spack/issues/42839
# - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp # py-numcodecs@0.7.3: gcc: error: unrecognized command-line option '-mno-sse2' # - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp # py-numcodecs@0.7.3: gcc: error: unrecognized command-line option '-mno-sse2'
# - variorum # variorum: https://github.com/spack/spack/issues/38786 # - variorum # variorum: https://github.com/spack/spack/issues/38786

2
share/spack/gitlab/cloud_pipelines/stacks/e4s-neoverse_v1/spack.yaml
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@ -92,6 +92,7 @@ spack:
- hypre - hypre
- kokkos +openmp - kokkos +openmp
- kokkos-kernels +openmp - kokkos-kernels +openmp
- laghos
- lammps - lammps
- lbann - lbann
- legion - legion
@ -173,6 +174,7 @@ spack:
# - bricks ~cuda # not respecting target=aarch64? # - bricks ~cuda # not respecting target=aarch64?
# - dealii # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'. # - dealii # slepc: make[1]: *** internal error: invalid --jobserver-auth string 'fifo:/tmp/GMfifo1313'.
# - geopm # geopm: https://github.com/spack/spack/issues/38795 # - geopm # geopm: https://github.com/spack/spack/issues/38795
# - glvis # glvis: https://github.com/spack/spack/issues/42839
# - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp # py-numcodecs@0.7.3: gcc: error: unrecognized command-line option '-mno-sse2' # - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp # py-numcodecs@0.7.3: gcc: error: unrecognized command-line option '-mno-sse2'
# - variorum # variorum: https://github.com/spack/spack/issues/38786 # - variorum # variorum: https://github.com/spack/spack/issues/38786

4
share/spack/gitlab/cloud_pipelines/stacks/e4s-oneapi/spack.yaml
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@ -15,6 +15,8 @@ spack:
blas: [openblas] blas: [openblas]
tbb: [intel-tbb] tbb: [intel-tbb]
variants: +mpi variants: +mpi
gl:
require: osmesa
elfutils: elfutils:
variants: ~nls variants: ~nls
gcc-runtime: gcc-runtime:
@ -101,6 +103,7 @@ spack:
- hypre - hypre
- kokkos +openmp - kokkos +openmp
- kokkos-kernels +openmp - kokkos-kernels +openmp
- laghos
- lammps - lammps
- lbann - lbann
- legion - legion
@ -186,6 +189,7 @@ spack:
# - upcxx # upcxx: /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin/fi_info: error while loading shared libraries: libfabric.so.1: cannot open shared object file: No such file or directory # - upcxx # upcxx: /opt/intel/oneapi/mpi/2021.10.0//libfabric/bin/fi_info: error while loading shared libraries: libfabric.so.1: cannot open shared object file: No such file or directory
# -- # --
# - bricks ~cuda # bricks: /opt/intel/oneapi/compiler/2024.0/bin/sycl-post-link: error while loading shared libraries: libonnxruntime.1.12.22.721.so: cannot open shared object file: No such file or directory # - bricks ~cuda # bricks: /opt/intel/oneapi/compiler/2024.0/bin/sycl-post-link: error while loading shared libraries: libonnxruntime.1.12.22.721.so: cannot open shared object file: No such file or directory
# - glvis ^llvm # glvis: https://github.com/spack/spack/issues/42839
# - pdt # pdt: pdbType.cc:193:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] # - pdt # pdt: pdbType.cc:193:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
# - quantum-espresso # quantum-espresso@7.2 /i3fqdx5: warning: <unknown>:0:0: loop not unroll-and-jammed: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering # - quantum-espresso # quantum-espresso@7.2 /i3fqdx5: warning: <unknown>:0:0: loop not unroll-and-jammed: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering
# - tau +mpi +python +syscall # pdt: pdbType.cc:193:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] # - tau +mpi +python +syscall # pdt: pdbType.cc:193:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]

6
share/spack/gitlab/cloud_pipelines/stacks/e4s-power/spack.yaml
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@ -32,8 +32,6 @@ spack:
+teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long +teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
xz: xz:
variants: +pic variants: +pic
mesa:
version: [21.3.8]
mpi: mpi:
require: mpich require: mpich
mpich: mpich:
@ -74,7 +72,6 @@ spack:
- drishti - drishti
- dxt-explorer - dxt-explorer
- dyninst - dyninst
# - ecp-data-vis-sdk ~cuda ~rocm +adios2 +ascent +cinema +darshan +faodel +hdf5 ~paraview +pnetcdf +sz +unifyfs +veloc ~visit +vtkm +zfp # +visit: libext, libxkbfile, libxrender, libxt, silo (https://github.com/spack/spack/issues/39538), cairo
- exaworks - exaworks
- flecsi - flecsi
- flit - flit
@ -97,6 +94,7 @@ spack:
- hypre - hypre
- kokkos +openmp - kokkos +openmp
- kokkos-kernels +openmp - kokkos-kernels +openmp
- laghos
- lammps - lammps
- lbann - lbann
- legion - legion
@ -158,6 +156,7 @@ spack:
- upcxx - upcxx
- wannier90 - wannier90
- xyce +mpi +shared +pymi +pymi_static_tpls - xyce +mpi +shared +pymi +pymi_static_tpls
# - ecp-data-vis-sdk ~cuda ~rocm +adios2 +ascent +cinema +darshan +faodel +hdf5 ~paraview +pnetcdf +sz +unifyfs +veloc ~visit +vtkm +zfp # +visit: libext, libxkbfile, libxrender, libxt, silo (https://github.com/spack/spack/issues/39538), cairo
# INCLUDED IN ECP DAV CPU # INCLUDED IN ECP DAV CPU
- adios2 - adios2
- ascent - ascent
@ -178,6 +177,7 @@ spack:
# -- # --
# - dealii # fltk: https://github.com/spack/spack/issues/38791 # - dealii # fltk: https://github.com/spack/spack/issues/38791
# - geopm # geopm: https://github.com/spack/spack/issues/38798 # - geopm # geopm: https://github.com/spack/spack/issues/38798
# - glvis # glvis: https://github.com/spack/spack/issues/42839
# - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp # py-numcodecs: gcc: error: unrecognized command line option '-mno-sse2'; did you mean '-mno-isel'? gcc: error: unrecognized command line option '-mno-avx2' # - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp # py-numcodecs: gcc: error: unrecognized command line option '-mno-sse2'; did you mean '-mno-isel'? gcc: error: unrecognized command line option '-mno-avx2'
# - phist +mpi # ghost@develop: gcc-9: error: unrecognized command line option '-march=native'; did you mean '-mcpu=native'? # - phist +mpi # ghost@develop: gcc-9: error: unrecognized command line option '-march=native'; did you mean '-mcpu=native'?
# - variorum # variorum: https://github.com/spack/spack/issues/38786 # - variorum # variorum: https://github.com/spack/spack/issues/38786

2
share/spack/gitlab/cloud_pipelines/stacks/e4s/spack.yaml
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@ -101,6 +101,7 @@ spack:
- julia ^llvm ~clang ~gold ~polly targets=amdgpu,bpf,nvptx,webassembly - julia ^llvm ~clang ~gold ~polly targets=amdgpu,bpf,nvptx,webassembly
- kokkos +openmp - kokkos +openmp
- kokkos-kernels +openmp - kokkos-kernels +openmp
- laghos
- lammps - lammps
- lbann - lbann
- legion - legion
@ -183,6 +184,7 @@ spack:
- zfp - zfp
# -- # --
# - geopm # geopm: https://github.com/spack/spack/issues/38795 # - geopm # geopm: https://github.com/spack/spack/issues/38795
# - glvis # glvis: https://github.com/spack/spack/issues/42839
# PYTHON PACKAGES # PYTHON PACKAGES
- opencv +python3 - opencv +python3