ea-utils: new version, cleanup, and newer gcc compat (#30204)

var/spack/repos/builtin/packages/ea-utils/package.py

@@ -3,6 +3,8 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
+import os
+
 from spack import *
 
 
@@ -13,20 +15,40 @@ class EaUtils(MakefilePackage):
 
     homepage = "https://expressionanalysis.github.io/ea-utils/"
     url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz"
+    git = "https://github.com/ExpressionAnalysis/ea-utils.git"
+    maintainers = ['snehring']
 
-    version('1.04.807', sha256='aa09d25e6aa7ae71d2ce4198a98e58d563f151f8ff248e4602fa437f12b8d05f')
+    version('2021-10-20', commit='10c21926a4dce4289d5052acfd73b8e744d4fede')
+    version('1.04.807', sha256='aa09d25e6aa7ae71d2ce4198a98e58d563f151f8ff248e4602fa437f12b8d05f',
+            deprecated=True)
 
-    depends_on('subversion')
+    depends_on('sparsehash')
     depends_on('zlib')
     depends_on('gsl')
     depends_on('bamtools')
-    # perl module required for make check, which is included in the default
-    # target
-    depends_on('perl', type='build')
+    depends_on('perl', type=['build', 'run'])
 
     build_directory = 'clipper'
 
     def edit(self, spec, prefix):
-        with working_dir('clipper'):
-            makefile = FileFilter('Makefile')
-            makefile.filter('/usr', prefix)
+        with working_dir(self.build_directory):
+            filter_file('/usr', prefix, 'Makefile')
+            # remove tests from all rule
+            filter_file(r'^all:.*$', 'all: $(BIN)', 'Makefile')
+            # remove the vendored sparsehash
+            filter_file(' sparsehash', '', 'Makefile')
+            # replace system perl references
+            for f in next(os.walk(os.getcwd()))[2]:
+                filter_file('/usr/bin/perl', spec['perl'].prefix.bin.perl, f)
+            # fix up test script require path
+            tests = ['join.t', 'mcf.t', 'multx.t']
+            rep = 'require "{0}";'.format(os.path.join(os.getcwd(),
+                                          't', 'test-prep.pl'))
+            for f in tests:
+                filter_file(r'^require.*$', rep, os.path.join(os.getcwd(),
+                            't', f))
+
+    def flag_handler(self, name, flags):
+        if name.lower() == 'cxxflags':
+            flags.append(self.compiler.cxx11_flag)
+        return (flags, None, None)