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ea-utils: new version, cleanup, and newer gcc compat (#30204)

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snehring 2022-05-03 23:06:59 -05:00 committed by GitHub
parent 3ce8bff22e
commit 157ee3458f
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1 changed files with 30 additions and 8 deletions
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38
var/spack/repos/builtin/packages/ea-utils/package.py
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@ -3,6 +3,8 @@
# #
# SPDX-License-Identifier: (Apache-2.0 OR MIT) # SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack import * from spack import *
@ -13,20 +15,40 @@ class EaUtils(MakefilePackage):
homepage = "https://expressionanalysis.github.io/ea-utils/" homepage = "https://expressionanalysis.github.io/ea-utils/"
url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz" url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz"
git = "https://github.com/ExpressionAnalysis/ea-utils.git"
maintainers = ['snehring']
version('1.04.807', sha256='aa09d25e6aa7ae71d2ce4198a98e58d563f151f8ff248e4602fa437f12b8d05f') version('2021-10-20', commit='10c21926a4dce4289d5052acfd73b8e744d4fede')
version('1.04.807', sha256='aa09d25e6aa7ae71d2ce4198a98e58d563f151f8ff248e4602fa437f12b8d05f',
deprecated=True)
depends_on('subversion') depends_on('sparsehash')
depends_on('zlib') depends_on('zlib')
depends_on('gsl') depends_on('gsl')
depends_on('bamtools') depends_on('bamtools')
# perl module required for make check, which is included in the default depends_on('perl', type=['build', 'run'])
# target
depends_on('perl', type='build')
build_directory = 'clipper' build_directory = 'clipper'
def edit(self, spec, prefix): def edit(self, spec, prefix):
with working_dir('clipper'): with working_dir(self.build_directory):
makefile = FileFilter('Makefile') filter_file('/usr', prefix, 'Makefile')
makefile.filter('/usr', prefix) # remove tests from all rule
filter_file(r'^all:.*$', 'all: $(BIN)', 'Makefile')
# remove the vendored sparsehash
filter_file(' sparsehash', '', 'Makefile')
# replace system perl references
for f in next(os.walk(os.getcwd()))[2]:
filter_file('/usr/bin/perl', spec['perl'].prefix.bin.perl, f)
# fix up test script require path
tests = ['join.t', 'mcf.t', 'multx.t']
rep = 'require "{0}";'.format(os.path.join(os.getcwd(),
't', 'test-prep.pl'))
for f in tests:
filter_file(r'^require.*$', rep, os.path.join(os.getcwd(),
't', f))
def flag_handler(self, name, flags):
if name.lower() == 'cxxflags':
flags.append(self.compiler.cxx11_flag)
return (flags, None, None)