Update for 'hdf5'. (#5790)
* Refactoring for 'hdf5'. * Remove 'unsupported' variant.
This commit is contained in:
Sergey Kosukhin
Todd Gamblin
parent
c7ac4e3774
commit
161dca6d5d
@ -55,13 +55,14 @@ class Hdf5(AutotoolsPackage):
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variant('shared', default=True,
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description='Builds a shared version of the library')
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variant('cxx', default=True, description='Enable C++ support')
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variant('fortran', default=True, description='Enable Fortran support')
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variant('hl', default=False, description='Enable the high-level library')
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variant('cxx', default=False, description='Enable C++ support')
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variant('fortran', default=False, description='Enable Fortran support')
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variant('threadsafe', default=False,
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description='Enable thread-safe capabilities')
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variant('mpi', default=True, description='Enable MPI support')
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variant('szip', default=False, description='Enable szip support')
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variant('threadsafe', default=False,
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description='Enable thread-safe capabilities')
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variant('pic', default=True,
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description='Produce position-independent code (for shared libs)')
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@ -72,11 +73,22 @@ class Hdf5(AutotoolsPackage):
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depends_on('szip', when='+szip')
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depends_on('zlib@1.1.2:')
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# According to ./configure --help thread-safe capabilities are:
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# "Not compatible with the high-level library, Fortran, or C++ wrappers."
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# (taken from hdf5@1.10.0patch1)
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conflicts('+threadsafe', when='+cxx')
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conflicts('+threadsafe', when='+fortran')
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# There are several officially unsupported combinations of the features:
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# 1. Thread safety is not guaranteed via high-level C-API but in some cases
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# it works.
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# conflicts('+threadsafe+hl')
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# 2. Thread safety is not guaranteed via Fortran (CXX) API, but it's
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# possible for a dependency tree to contain a package that uses Fortran
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# (CXX) API in a single thread and another one that uses low-level C-API
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# in multiple threads. To allow for such scenarios, we don't specify the
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# following conflicts.
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# conflicts('+threadsafe+cxx')
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# conflicts('+threadsafe+fortran')
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# 3. Parallel features are not supported via CXX API, but for the reasons
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# described in #2 we allow for such combination.
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# conflicts('+mpi+cxx')
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def url_for_version(self, version):
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url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-{0}/hdf5-{1}/src/hdf5-{1}.tar.gz"
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@ -147,80 +159,71 @@ def libs(self):
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@run_before('configure')
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def fortran_check(self):
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spec = self.spec
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if '+fortran' in spec and not self.compiler.fc:
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if '+fortran' in self.spec and not self.compiler.fc:
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msg = 'cannot build a Fortran variant without a Fortran compiler'
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raise RuntimeError(msg)
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def configure_args(self):
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spec = self.spec
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# Handle compilation after spec validation
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extra_args = []
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# Always enable this option. This does not actually enable any
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# features: it only *allows* the user to specify certain
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# combinations of other arguments. Enabling it just skips a
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# sanity check in configure, so this doesn't merit a variant.
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extra_args.append("--enable-unsupported")
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extra_args = ['--enable-unsupported']
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extra_args += self.enable_or_disable('threadsafe')
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extra_args += self.enable_or_disable('cxx')
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extra_args += self.enable_or_disable('hl')
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extra_args += self.enable_or_disable('fortran')
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if spec.satisfies('@1.10:'):
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if '+debug' in spec:
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if '+szip' in self.spec:
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extra_args.append('--with-szlib=%s' % self.spec['szip'].prefix)
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else:
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extra_args.append('--without-szlib')
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if self.spec.satisfies('@1.10:'):
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if '+debug' in self.spec:
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extra_args.append('--enable-build-mode=debug')
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else:
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extra_args.append('--enable-build-mode=production')
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else:
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if '+debug' in spec:
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if '+debug' in self.spec:
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extra_args.append('--enable-debug=all')
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else:
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extra_args.append('--enable-production')
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if '+shared' in spec:
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# '--enable-fortran2003' no longer exists as of version 1.10.0
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if '+fortran' in self.spec:
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extra_args.append('--enable-fortran2003')
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else:
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extra_args.append('--disable-fortran2003')
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if '+shared' in self.spec:
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extra_args.append('--enable-shared')
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else:
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extra_args.append('--disable-shared')
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extra_args.append('--enable-static-exec')
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if '+cxx' in spec:
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extra_args.append('--enable-cxx')
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if '+pic' in self.spec:
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extra_args += ['%s=%s' % (f, self.compiler.pic_flag)
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for f in ['CFLAGS', 'CXXFLAGS', 'FCFLAGS']]
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if '+fortran' in spec:
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extra_args.append('--enable-fortran')
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# '--enable-fortran2003' no longer exists as of version 1.10.0
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if spec.satisfies('@:1.8.16'):
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extra_args.append('--enable-fortran2003')
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if '+pic' in spec:
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extra_args.append('CFLAGS={0}'.format(self.compiler.pic_flag))
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extra_args.append('CXXFLAGS={0}'.format(self.compiler.pic_flag))
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extra_args.append('FCFLAGS={0}'.format(self.compiler.pic_flag))
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if '+mpi' in spec:
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if '+mpi' in self.spec:
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# The HDF5 configure script warns if cxx and mpi are enabled
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# together. There doesn't seem to be a real reason for this, except
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# that parts of the MPI interface are not accessible via the C++
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# interface. Since they are still accessible via the C interface,
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# this is not actually a problem.
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extra_args.extend([
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"--enable-parallel",
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"CC=%s" % spec['mpi'].mpicc
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])
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extra_args += ['--enable-parallel',
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'CC=%s' % self.spec['mpi'].mpicc]
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if '+cxx' in spec:
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extra_args.append("CXX=%s" % spec['mpi'].mpicxx)
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if '+cxx' in self.spec:
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extra_args.append('CXX=%s' % self.spec['mpi'].mpicxx)
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if '+fortran' in spec:
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extra_args.append("FC=%s" % spec['mpi'].mpifc)
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if '+fortran' in self.spec:
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extra_args.append('FC=%s' % self.spec['mpi'].mpifc)
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if '+szip' in spec:
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extra_args.append("--with-szlib=%s" % spec['szip'].prefix)
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extra_args.append('--with-zlib=%s' % self.spec['zlib'].prefix)
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if '+threadsafe' in spec:
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extra_args.extend([
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'--enable-threadsafe',
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'--disable-hl',
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])
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return ["--with-zlib=%s" % spec['zlib'].prefix] + extra_args
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return extra_args
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@run_after('configure')
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def patch_postdeps(self):
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@ -83,7 +83,7 @@ class Netcdf(AutotoolsPackage):
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# Required for NetCDF-4 support
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depends_on("zlib@1.2.5:")
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depends_on('hdf5')
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depends_on('hdf5+hl')
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# NetCDF 4.4.0 and prior have compatibility issues with HDF5 1.10 and later
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# https://github.com/Unidata/netcdf-c/issues/250
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