motioncor2: update (#30094)

- older versions are no longer available for download so mark them
  deprecated
- set manual_download
- set url_for_version
- only install the binary that matches the cuda version

var/spack/repos/builtin/packages/motioncor2/package.py

@@ -3,6 +3,10 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
+import os
+
+from spack import *
+
 
 class Motioncor2(Package):
     """MotionCor2 is a multi-GPU program that corrects beam-induced sample
@@ -14,23 +18,35 @@ class Motioncor2(Package):
     to keep up with automated data collection."""
 
     homepage = "http://msg.ucsf.edu/em/software"
-    url      = "http://msg.ucsf.edu/MotionCor2/MotionCor2-1.1.0.zip"
+    manual_download = True
 
+    version('1.4.7',
+            sha256='8c33969b10916835b55f14f3c370f67ebe5c4b2a9df9ec487c5251710f038e6b')
+
+    # None of the below are available for download
     version('1.1.0',
-            '6e37e7ed63a9f0aab5d794b2604d5ba79333960bb9440a1a218630b03dbeaeac')
+            '6e37e7ed63a9f0aab5d794b2604d5ba79333960bb9440a1a218630b03dbeaeac',
+            deprecated=True)
     version('1.0.5',
             '4efa55af25644bcff1ca7882419267b8c094c9cc6155b37d2c204b154c56f5a8',
-            url='http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.5.tar.gz')
+            url='http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.5.tar.gz',
+            deprecated=True)
     version('1.0.4',
             'c75738160ac18d3f27c33677e78e63313d8ec2b023b5a46173428c3fa0451a94',
-            url='http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.4.tar.gz')
+            url='http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.4.tar.gz',
+            deprecated=True)
 
-    depends_on('cuda@8.0:8', type='run')
+    def url_for_version(self, version):
-    # libtiff.so.3 is required
+        return "file://{0}/MotionCor2_{1}.zip".format(os.getcwd(), version)
-    depends_on('libtiff@3.0:3', type='run')
+
+    depends_on('cuda@10.2,11.1:11.5', type='run')
+    depends_on('libtiff', type='run')
 
     def install(self, spec, prefix):
+        cuda_version = spec['cuda'].version.up_to(2).joined
+
         mkdirp(prefix.bin)
-        install('MotionCor2_*', prefix.bin)
+        with working_dir('MotionCor2_{0}'.format(spec.version)):
-        with working_dir(prefix.bin):
+            install('MotionCor2_{0}_Cuda{1}_*'.format(spec.version,
-            symlink('MotionCor2_{0}'.format(spec.version), 'MotionCor2')
+                                                      cuda_version),
+                    join_path(prefix.bin, 'MotionCor2'))