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r-geoquery: created new package (#5879)

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* r-geoquery: created new package

* r-geoquery: added versioned dependency on r
This commit is contained in:
Yifan Zhu
2017-10-24 04:25:02 -05:00
committed by Todd Gamblin
parent 25d38fe077
commit 17d94a5b51
1 changed files with 44 additions and 0 deletions
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var/spack/repos/builtin/packages/r-geoquery/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RGeoquery(RPackage):
"""The NCBI Gene Expression Omnibus (GEO) is a public repository of
microarray data. Given the rich and varied nature of this resource,
it is only natural to want to apply BioConductor tools to these data.
GEOquery is the bridge between GEO and BioConductor."""
homepage = "https://bioconductor.org/packages/GEOquery/"
url = "https://git.bioconductor.org/packages/GEOquery"
list_url = homepage
version('2.42.0', git='https://git.bioconductor.org/packages/GEOquery', commit='c26adef8d3ddbd6932a3170f2f84f6e4327641fb')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-xml', type=('build', 'run'))
depends_on('r-rcurl', type=('build', 'run'))
depends_on('r-httr', type=('build', 'run'))
depends_on('r@3.4.0:3.4.9', when='@2.42.0')