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genemark et package: add version 4.38 (#10519)

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Also add heu_dir to bin/
This commit is contained in:
Levi Baber 2019-02-06 13:46:35 -06:00 committed by Peter Scheibel
parent 11c52c3bf7
commit 1a34bebe79
1 changed files with 9 additions and 1 deletions
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10
var/spack/repos/builtin/packages/genemark-et/package.py
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@ -10,10 +10,16 @@
class GenemarkEt(Package):
"""Gene Prediction in Bacteria, archaea, Metagenomes and
Metatranscriptomes."""
Metatranscriptomes.
When downloaded this file is named the same for all versions.
Spack will search your current directory for the download file.
Alternatively, add this file to a mirror so that Spack can find it.
For instructions on how to set up a mirror, see
http://spack.readthedocs.io/en/latest/mirrors.html"""
homepage = "http://topaz.gatech.edu/GeneMark"
version('4.38', sha256='cee3bd73d331be44159eac15469560d0b07ffa2c98ac764c37219e1f3b7d3146')
version('4.33', '4ab7d7d3277a685dfb49e11bc5b493c3')
depends_on('perl', type=('build', 'run'))
@ -23,12 +29,14 @@ def url_for_version(self, version):
def install(self, spec, prefix):
mkdirp(prefix.bin)
mkdirp(prefix.bin.heu_dir)
with working_dir('gmes_petap'):
install_tree('lib', prefix.lib)
files = glob.iglob('*')
for file in files:
if os.path.isfile(file):
install(file, prefix.bin)
install_tree('heu_dir', prefix.bin.heu_dir)
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('PERL5LIB', prefix.lib)