Percept package: add version (#12434)

* Choose a specific commit as a version (before, the only version was
  the master branch)
* Add CMake patch which allows for building the version added here
  (this replaces the existing patches for percept in Spack)
* Update trilinos dependency

var/spack/repos/builtin/packages/percept/cmakelists.patch

@@ -0,0 +1,76 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index b984099..fea4fdc 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -92,18 +92,7 @@ MESSAGE("   Trilinos_BUILD_SHARED_LIBS = ${Trilinos_BUILD_SHARED_LIBS}")
+ MESSAGE("   Trilinos_CXX_COMPILER_FLAGS = ${Trilinos_CXX_COMPILER_FLAGS}")
+ MESSAGE("End of Trilinos details\n")
+ 
+-# Optional Installation helpers
+-SET (INSTALL_PERCEPT FALSE)
+-IF (ENABLE_INSTALL)
+-    SET (INSTALL_PERCEPT TRUE)
+-ENDIF()
+-
+-IF (INSTALL_PERCEPT)
+-  set(BINARY_INSTALL_DIR bin)
+-  set(INCLUDE_INSTALL_DIR include)
+-  set(LIB_INSTALL_DIR lib)
+-  INCLUDE(CMakePackageConfigHelpers)
+-ENDIF ()
++INCLUDE(CMakePackageConfigHelpers)
+ 
+ MESSAGE("Setting and checking of compilers:")
+ SET(CMAKE_CXX_COMPILER ${Trilinos_CXX_COMPILER} )
+@@ -229,6 +218,9 @@ FILE (GLOB HEADER
+ FILE (GLOB ADAPT_SOURCE src/adapt/main/*.cpp)
+ #MESSAGE("-- ADAPT_SOURCE = ${ADAPT_SOURCE}")
+ 
++FILE (GLOB TRANSFER_SOURCE src/percept/mesh_transfer/*.cpp)
++#MESSAGE("-- TRANSFER_SOURCE = ${TRANSFER_SOURCE}")
++
+ FILE (GLOB PERCEPT_UTEST_SOURCE test/unit_tests/*.cpp)
+ #MESSAGE("-- PERCEPT_UTEST_SOURCE = ${PERCEPT_UTEST_SOURCE}")
+ 
+@@ -251,6 +243,7 @@ SET(percept_lib_name "percept")
+ 
+ #SET(percept_ex_name "perceptX")
+ SET(adapt_ex_name "mesh_adapt")
++SET(transfer_ex_name "mesh_transfer")
+ #SET(percept_utest_name "percept_utest")
+ #SET(percept_rtest_name "percept_rtest")
+ #SET(percept_htest_name "percept_htest")
+@@ -268,6 +261,9 @@ IF (NOT STK_PERCEPT_LITE)
+   ADD_EXECUTABLE(${adapt_ex_name} ${ADAPT_MAIN} ${ADAPT_HEADER})
+   TARGET_LINK_LIBRARIES(${adapt_ex_name} ${percept_lib_name} ${YAML_LIBRARY})
+ 
++  ADD_EXECUTABLE(${transfer_ex_name} ${TRANSFER_SOURCE})
++  TARGET_LINK_LIBRARIES(${transfer_ex_name} ${percept_lib_name} ${YAML_LIBRARY})
++
+   #ADD_EXECUTABLE(${percept_utest_name} ${PERCEPT_UTEST_SOURCE} ${PERCEPT_UTEST_HEADER})
+   #TARGET_LINK_LIBRARIES(${percept_utest_name} ${percept_lib_name} ${GTEST_LIBRARY})
+ 
+@@ -281,7 +277,7 @@ IF (NOT STK_PERCEPT_LITE)
+   TARGET_LINK_LIBRARIES(${percept_lib_name} ${Trilinos_LIBRARIES} ${YAML_LIBRARY} ${OPENNURBS_LIBRARY} ${BOOST_LIBRARIES})
+ 
+   SET_PROPERTY(
+-    TARGET ${percept_lib_name} ${adapt_ex_name} #${percept_utest_name} ${percept_rtest_name}
++    TARGET ${percept_lib_name} ${adapt_ex_name} ${transfer_ex_name} #${percept_utest_name} ${percept_rtest_name}
+     PROPERTY COMPILE_DEFINITIONS STK_PERCEPT_LITE=0 STK_PERCEPT_HAS_GEOMETRY STK_PERCEPT_USE_INTREPID
+   )
+ 
+@@ -290,6 +286,14 @@ IF (NOT STK_PERCEPT_LITE)
+     PROPERTY COMPILE_DEFINITIONS STK_PERCEPT_LITE=0
+   )
+ 
++  install(TARGETS ${percept_ex_name} ${adapt_ex_name} ${transfer_ex_name}
++          ${percept_htest_name} ${percept_rtest_name} ${percept_utest_name}
++          percept
++          RUNTIME DESTINATION bin
++          ARCHIVE DESTINATION lib
++          LIBRARY DESTINATION lib)
++  include(CMakePackageConfigHelpers)
++
+ ENDIF()
+ 
+ 

var/spack/repos/builtin/packages/percept/fix_cmakelists.patch

@@ -1,54 +0,0 @@
---- percept.orig/CMakeLists.txt	2017-12-08 09:16:41.572819000 -0700
-+++ percept/CMakeLists.txt	2017-12-08 09:17:25.028818000 -0700
-@@ -97,13 +97,6 @@
-     SET (INSTALL_PERCEPT TRUE)
- ENDIF()
- 
--IF (INSTALL_PERCEPT)
--  set(BINARY_INSTALL_DIR bin)
--  set(INCLUDE_INSTALL_DIR include)
--  set(LIB_INSTALL_DIR lib)
--  INCLUDE(CMakePackageConfigHelpers)
--ENDIF ()
--
- MESSAGE("Setting and checking of compilers:")
- SET(CMAKE_CXX_COMPILER ${Trilinos_CXX_COMPILER} )
- SET(CMAKE_C_COMPILER ${Trilinos_C_COMPILER} )
-@@ -269,6 +262,8 @@
- FILE (GLOB ADAPT_SOURCE src/adapt/main/*.cpp)
- MESSAGE("-- ADAPT_SOURCE = ${ADAPT_SOURCE}")
- 
-+file(GLOB TRANSFER_SOURCE src/percept/mesh_transfer/*.cpp)
-+
- FILE (GLOB PERCEPT_UTEST_SOURCE test/unit_tests/*.cpp)
- MESSAGE("-- PERCEPT_UTEST_SOURCE = ${PERCEPT_UTEST_SOURCE}")
- 
-@@ -330,8 +325,11 @@
-   TARGET_LINK_LIBRARIES(${percept_lib_name} ${Trilinos_LIBRARIES} ${YAML_LIBRARY} ${OPENNURBS_LIBRARY} ${BOOST_LIBRARIES})
- #  TARGET_LINK_LIBRARIES(${percept_lib_name} ${GTEST_LIBRARY})
- 
-+  add_executable(mesh_transfer ${TRANSFER_SOURCE})
-+  target_link_libraries(mesh_transfer ${percept_lib_name})
-+
-   SET_PROPERTY(
--    TARGET ${percept_lib_name} ${adapt_ex_name} ${percept_utest_name} ${percept_rtest_name}
-+    TARGET ${percept_lib_name} mesh_transfer ${adapt_ex_name} ${percept_utest_name} ${percept_rtest_name}
-     PROPERTY COMPILE_DEFINITIONS STK_PERCEPT_LITE=0 STK_PERCEPT_HAS_GEOMETRY STK_PERCEPT_USE_INTREPID
-   )
- 
-@@ -342,5 +340,15 @@
- 
- ENDIF()
- 
-+IF (INSTALL_PERCEPT)
-+  install(TARGETS ${percept_ex_name} ${adapt_ex_name}
-+          ${percept_htest_name} ${percept_rtest_name} ${percept_utest_name}
-+          mesh_transfer percept
-+          RUNTIME DESTINATION bin
-+          ARCHIVE DESTINATION lib
-+          LIBRARY DESTINATION lib)
-+  #install(DIRECTORY include/ DESTINATION include)
-+  include(CMakePackageConfigHelpers)
-+ENDIF ()
- 
- MESSAGE("\nAnd CMake says...:")

var/spack/repos/builtin/packages/percept/fix_header.patch

@@ -1,19 +0,0 @@
---- percept.orig/src/percept/MeshType.hpp	2017-12-08 09:16:42.080818000 -0700
-+++ percept/src/percept/MeshType.hpp	2017-12-08 09:17:25.568819000 -0700
-@@ -11,6 +11,7 @@
- #include <percept/Percept.hpp>
- 
- #include <array>
-+#include <memory>
- #include <stk_mesh/base/Field.hpp>
- #include <stk_mesh/base/Entity.hpp>
- #include <stk_mesh/base/Bucket.hpp>
-@@ -62,7 +63,7 @@
-       typedef Kokkos::LayoutRight   SecondaryDataLayout;
- #endif
- 
--	#elif KOKKOS_HAVE_OPENMP
-+	#elif defined(KOKKOS_HAVE_OPENMP)
-   	  typedef Kokkos::OpenMP     ExecSpace;
-   	  typedef Kokkos::OpenMP     MemSpace;
-   	  typedef Kokkos::LayoutLeft DataLayout;

var/spack/repos/builtin/packages/percept/package.py

@@ -14,19 +14,18 @@ class Percept(CMakePackage):
     homepage = "https://github.com/PerceptTools/percept"
     git      = "https://github.com/PerceptTools/percept.git"
 
-    # This package file was created at percept
+    # The open version of Percept does not seem to be supported on
-    # commit dc1c8ec0175213146ac139946beca185a84c22e8
+    # github and it doesn't have tags. So we specify a specific commit
-    version('develop', branch='master')
+    # here and the patch allows us to build the mesh_transfer exe and
+    # creates a make install target so Spack can install Percept
+    version('master', commit='363cdd0050443760d54162f140b2fb54ed9decf0')
+    patch('cmakelists.patch')
 
-    depends_on('googletest~shared@:1.8.0')
+    depends_on('googletest~shared')
     depends_on('opennurbs@percept')
     depends_on('boost+graph+mpi')
     depends_on('yaml-cpp+pic~shared@0.5.3:')
-    # Percept was initially tested against Trilinos 12.12.1
+    depends_on('trilinos~shared+exodus+tpetra+epetra+epetraext+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+zlib+pnetcdf+aztec+sacado~openmp+shards+intrepid+cgns@master,12.14.1:')
-    depends_on('trilinos~shared+exodus+tpetra+epetra+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+zlib+pnetcdf+aztec+sacado~openmp+shards+intrepid+cgns@master,12.12.1:')
-
-    patch('fix_cmakelists.patch')
-    patch('fix_header.patch')
 
     def cmake_args(self):
         spec = self.spec
@@ -49,7 +48,6 @@ def cmake_args(self):
             spec['opennurbs'].prefix.lib,
             '-DPERCEPT_TPLS_INSTALL_DIR:PATH=%s' %
             spec['googletest'].prefix,
-            '-DENABLE_INSTALL:BOOL=ON'
         ])
 
         return options