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Update Spack Bioconductor packages to Bioconductor 3.15 (#30984)

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This commit is contained in:
Glenn Johnson
2022-06-07 13:10:01 -05:00
committed by GitHub
parent 815764bdef
commit 1b9a1992fb
187 changed files with 256 additions and 8 deletions
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1
var/spack/repos/builtin/packages/r-a4/package.py
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@@ -14,6 +14,7 @@ class RA4(RPackage):
bioc = "a4"
version('1.44.0', commit='5b0fc5a9971d8f3688ad1f88a4f5ee1498e91633')
version('1.42.0', commit='fc26809e2bce7cd50d99d6f6dd5f85c38342fdea')
version('1.38.0', commit='5b7a9087bab10c55e24707e96e48046995236c94')
version('1.32.0', commit='03770d4e53be4eed1bd0ab8f8cddba66854b4712')

1
var/spack/repos/builtin/packages/r-a4base/package.py
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@@ -14,6 +14,7 @@ class RA4base(RPackage):
bioc = "a4Base"
version('1.44.0', commit='9ae69e03118c7b14df0e6c9e3b25362b09f25bbe')
version('1.42.0', commit='d7296e2792020e9c5b1c19101104326ee8bebfe6')
version('1.38.0', commit='4add242fa9c62795aca5b0dfca34a43484c5aa82')
version('1.32.0', commit='8a1e15d25494c54db8c1de5dbbd69e628569e3d7')

1
var/spack/repos/builtin/packages/r-a4classif/package.py
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@@ -15,6 +15,7 @@ class RA4classif(RPackage):
bioc = "a4Classif"
version('1.44.0', commit='df0fce781f9bc480a1159d958c9a63c314a9ed01')
version('1.42.0', commit='820854a7ca9ed0c295479a25b7e3375c6d01d0b5')
version('1.38.0', commit='c4d058813efb835774813b2d69c52912162f8e75')
version('1.32.0', commit='aa4f22df2da54b71e1a238d2b9cbcb3afa6f7f88')

1
var/spack/repos/builtin/packages/r-a4core/package.py
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@@ -14,6 +14,7 @@ class RA4core(RPackage):
bioc = "a4Core"
version('1.44.0', commit='61a7f3a51a41af615bfd4c22984e4c4a82874e8c')
version('1.42.0', commit='6985950b72c2a0f20ec44fe2067d8864e004bfaa')
version('1.38.0', commit='a027dcd3486c64950815ec7c7271f1f65ba3d8a1')
version('1.32.0', commit='2916a29723bdd514d5d987f89725d141d1d2dfce')

1
var/spack/repos/builtin/packages/r-a4preproc/package.py
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@@ -14,6 +14,7 @@ class RA4preproc(RPackage):
bioc = "a4Preproc"
version('1.44.0', commit='252381265b96b83803a93e0c2014dd6b0574e57f')
version('1.42.0', commit='773a91e884d2ada16fe9cf57d5ed53c0155e3fa2')
version('1.38.0', commit='c93c223bd531bff090531a109b51f8dcd710d0cb')
version('1.32.0', commit='0da742e500892b682feeb39256906282ad20c558')

1
var/spack/repos/builtin/packages/r-a4reporting/package.py
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@@ -14,6 +14,7 @@ class RA4reporting(RPackage):
bioc = "a4Reporting"
version('1.44.0', commit='bfe83507daf53e2e327474ea3012f0dc920efac1')
version('1.42.0', commit='b0d715b9cdac80bc412f0a9a6b33941c4a7582bb')
version('1.38.0', commit='cd3cf244e7a299b2485684ed15519cbbda1c590f')
version('1.32.0', commit='8d781899c625892080eb50f322694dd640d5f792')

1
var/spack/repos/builtin/packages/r-abaenrichment/package.py
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@@ -24,6 +24,7 @@ class RAbaenrichment(RPackage):
bioc = "ABAEnrichment"
version('1.26.0', commit='33df9e162aec07e2aae92cc058cbfb33720ba4b4')
version('1.24.0', commit='5d20752263ae8f18ea5f5a6cfbdd5921a0f236d7')
version('1.20.0', commit='608433a0b07e6dd99915dc536a038d960f1be1d5')
version('1.14.1', commit='e1ebfb5de816b924af16675a5ba9ed1a6b527b23')

1
var/spack/repos/builtin/packages/r-absseq/package.py
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@@ -17,6 +17,7 @@ class RAbsseq(RPackage):
bioc = "ABSSeq"
version('1.50.0', commit='4f384d04ebaae6ea0b56e5cff9a9dcdcb6c8afb0')
version('1.48.0', commit='b237c967d44d075ca306c35e92df8b66a60ce72d')
version('1.44.0', commit='c202b4a059021ed1228ccee7303c69b0aa4ca1ee')
version('1.38.0', commit='b686d92f0f0efdb835982efe761d059bc24b34ce')

1
var/spack/repos/builtin/packages/r-acde/package.py
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@@ -22,6 +22,7 @@ class RAcde(RPackage):
bioc = "acde"
version('1.26.0', commit='dfef9a435062e948efd5eda22942a0d500baa992')
version('1.24.0', commit='0c3c4d47af7eaff37420032ea5245743a65124cf')
version('1.20.0', commit='cefb4f2e2b0ef3c5f51944c0ece7a71294020350')
version('1.14.0', commit='6017c7436a46f186b2a3cea9d2b93274f6dd3417')

1
var/spack/repos/builtin/packages/r-acgh/package.py
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@@ -16,6 +16,7 @@ class RAcgh(RPackage):
bioc = "aCGH"
version('1.74.0', commit='e7ba380af0da138788eb6c86f5dbe453269c0810')
version('1.72.0', commit='b5d4022ac487125194d3913f1b8c2948db6e2792')
version('1.68.0', commit='91f41a3917ddce43eb05e11c90eb99c467ba2247')
version('1.62.0', commit='3b68b69c3380fa3b66dfb060457628a4a9c22d4f')

1
var/spack/repos/builtin/packages/r-acme/package.py
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@@ -21,6 +21,7 @@ class RAcme(RPackage):
bioc = "ACME"
version('2.52.0', commit='14a97c722d0201654af9e583e7e462b458c28a77')
version('2.50.0', commit='d55a19a8c091e8ea5fd35041520107a7f7603e14')
version('2.46.0', commit='68f45c9f7d34c28adf6a0fc4245fdf63881109de')
version('2.40.0', commit='38499e512998d54d874a0bfdc173f4ba5de5f01a')

1
var/spack/repos/builtin/packages/r-adsplit/package.py
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@@ -16,6 +16,7 @@ class RAdsplit(RPackage):
bioc = "adSplit"
version('1.66.0', commit='64580a6f7a9bc6b16334267c90df48fbb839cc16')
version('1.64.0', commit='32f150eb51c66b867301dceeb527de5b97f9f490')
version('1.60.0', commit='de5abccfe652cbc5b5f49fb6ed77cdd15cc760cd')
version('1.54.0', commit='ce8fb61f4a3d0942294da2baa28be1472acb0652')

1
var/spack/repos/builtin/packages/r-affxparser/package.py
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@@ -20,6 +20,7 @@ class RAffxparser(RPackage):
bioc = "affxparser"
version('1.68.1', commit='821a01a2df18115a3b7864b3f45418255b7123eb')
version('1.66.0', commit='2ea72d4c924ac14bdd807b23563c8501c226ce3a')
version('1.62.0', commit='b3e988e5c136c3f1a064e1da13730b403c8704c0')
version('1.56.0', commit='20d27701ad2bdfacf34d857bb8ecb4f505b4d056')

2
var/spack/repos/builtin/packages/r-affy/package.py
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@@ -15,6 +15,7 @@ class RAffy(RPackage):
bioc = "affy"
version('1.74.0', commit='2266c4a46eda7e5b64f7f3e17e8b61e7b85579ff')
version('1.72.0', commit='3750b4eb8e5224b19100f6c881b67e568d8968a2')
version('1.68.0', commit='1664399610c9aa519399445a2ef8bb9ea2233eac')
version('1.62.0', commit='097ab4aa98a1700c5fae65d07bed44a477714605')
@@ -24,7 +25,6 @@ class RAffy(RPackage):
version('1.54.0', commit='a815f02906fcf491b28ed0a356d6fce95a6bd20e')
depends_on('r@2.8.0:4.0', type=('build', 'run'), when='@:1.68.0')
depends_on('r@:4.0', type=('build', 'run'), when='@:1.68.0')
depends_on('r-biocgenerics@0.1.12:', type=('build', 'run'))
depends_on('r-biobase@2.5.5:', type=('build', 'run'))
depends_on('r-affyio@1.13.3:', type=('build', 'run'))

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var/spack/repos/builtin/packages/r-affycomp/package.py
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@@ -14,6 +14,7 @@ class RAffycomp(RPackage):
bioc = "affycomp"
version('1.72.0', commit='c52baea98b80abd4a99380ac9d4b68ef91869d40')
version('1.70.0', commit='487f6775975092475581a6c02ddb27590559cf07')
version('1.66.0', commit='388d01af8b1e6ab11051407f77d0206512df8424')
version('1.60.0', commit='5dbe61fa04941529a0fc70b728021c8e00c4ba0c')

1
var/spack/repos/builtin/packages/r-affycompatible/package.py
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@@ -18,6 +18,7 @@ class RAffycompatible(RPackage):
bioc = "AffyCompatible"
version('1.56.0', commit='37ea4bb885c791fb989f40092f3d0d2c57d35641')
version('1.54.0', commit='fde7d86ccdb03c13c4838c18ac25477ffe6e0fe5')
version('1.50.0', commit='3b12d12bd6d1a9f0d45e012817231d137d47089e')
version('1.44.0', commit='98a27fbe880551fd32a5febb6c7bde0807eac476')

1
var/spack/repos/builtin/packages/r-affycontam/package.py
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@@ -14,6 +14,7 @@ class RAffycontam(RPackage):
bioc = "affyContam"
version('1.54.0', commit='c5208b48b8881983ff53a4713244327e8ad13b78')
version('1.52.0', commit='47c1d86da330f157d3ece0e26b0657d66a5ca0c9')
version('1.48.0', commit='88387a2ad4be4234d36710c65f2ca3a5b06b67da')
version('1.42.0', commit='8a5e94a5ae8c2ecfafa6177b84a6e8ab07e14fbe')

1
var/spack/repos/builtin/packages/r-affycoretools/package.py
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@@ -15,6 +15,7 @@ class RAffycoretools(RPackage):
bioc = "affycoretools"
version('1.68.1', commit='69546b1fe5edd71eca130d53d33f0fb0fcf62c97')
version('1.66.0', commit='6bf769d70e196634097f465ed2fa85cce5312a6d')
version('1.62.0', commit='c9779e4da648fd174c9bd575c6020be1c03047c4')
version('1.56.0', commit='71eab04056a8d696470420a600b14900186be898')

1
var/spack/repos/builtin/packages/r-affydata/package.py
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@@ -15,6 +15,7 @@ class RAffydata(RPackage):
bioc = "affydata"
version('1.44.0', commit='f18304a356cee8cd7297bab362b13c40e50439df')
version('1.42.0', commit='4b54c1206bedd27ff9be32affc999a279f4e96f0')
version('1.38.0', commit='b5e843b2514789d0d87bea44d762c89a95314ee7')
version('1.32.0', commit='c7cef93f6edd23024f4b1985b90e89058874c2bd')

1
var/spack/repos/builtin/packages/r-affyilm/package.py
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@@ -16,6 +16,7 @@ class RAffyilm(RPackage):
bioc = "affyILM"
version('1.48.0', commit='4603a4c4d6c2330a8a56a7bb657dc56c51a9393a')
version('1.46.0', commit='67ffbfa6c881ed83d15604bf4463fe5dba81036b')
version('1.42.0', commit='b97b29786b866de38802ebbb995169be91e90942')
version('1.36.0', commit='619ced931ba72860ce4cb41c841bbca1636a1132')

1
var/spack/repos/builtin/packages/r-affyio/package.py
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@@ -15,6 +15,7 @@ class RAffyio(RPackage):
bioc = "affyio"
version('1.66.0', commit='3a0b90704fc46cddd99a72b985a6bdb348f69b50')
version('1.64.0', commit='aa7ce48f3f4110431f6f488d45961fde4019ffb0')
version('1.60.0', commit='ee20528b32700e99768da48143d6d45c9a7bbe91')
version('1.54.0', commit='c0e306e1805a556a1074d1af1acdd18e0a04477f')

1
var/spack/repos/builtin/packages/r-affyplm/package.py
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@@ -17,6 +17,7 @@ class RAffyplm(RPackage):
bioc = "affyPLM"
version('1.72.0', commit='394c0a8e213f188d0b1d01e20516df8bf1bc5c09')
version('1.70.0', commit='64abfec92b347aa340b54a8c7b2fbd524fe9c312')
version('1.66.0', commit='f0780c3d0e9dccaff83861b98beb5c1d324c4399')
version('1.60.0', commit='b11e377d6af3fd0f28aba8195ebf171003da1a9d')

1
var/spack/repos/builtin/packages/r-affyrnadegradation/package.py
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@@ -18,6 +18,7 @@ class RAffyrnadegradation(RPackage):
bioc = "AffyRNADegradation"
version('1.42.0', commit='5775f41f538b3c8ee4d07d38cec1b49c548cebe6')
version('1.40.0', commit='8539a91ee464d692a267bb17c91dc1ef9a231f41')
version('1.36.0', commit='89662b93076659db2967a526899184c12c156bc5')
version('1.30.0', commit='620c464fb09248e1c7a122828eab59a4fb778cc1')

1
var/spack/repos/builtin/packages/r-agdex/package.py
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@@ -14,6 +14,7 @@ class RAgdex(RPackage):
bioc = "AGDEX"
version('1.44.0', commit='9d3eb90eaf7bf093c7fa73facb3df89506a85185')
version('1.42.0', commit='175cf1b384b0942103d841b1feb9e4f7d141ba06')
version('1.38.0', commit='7e2c1f5f27ccbea6a7157f5122212e40408b74da')
version('1.32.0', commit='254ad2c876ab9ac48c3c3b395160dccabc084acf')

1
var/spack/repos/builtin/packages/r-agilp/package.py
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@@ -13,6 +13,7 @@ class RAgilp(RPackage):
bioc = "agilp"
version('3.28.0', commit='2c6dfccc76473b5bef13b75fa59adf46b3381f55')
version('3.26.0', commit='3170fe2b1cc459d5e2ca7f61a127aac17cd66a96')
version('3.22.0', commit='7d089d576752e0526f15a1007e94436089954313')
version('3.16.0', commit='2900d6066317f21d076b3a043b16f32eca168c47')

1
var/spack/repos/builtin/packages/r-agimicrorna/package.py
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@@ -14,6 +14,7 @@ class RAgimicrorna(RPackage):
bioc = "AgiMicroRna"
version('2.46.0', commit='8c6d73e1c3f1f9cc019bdb219b19e6179bb1efe4')
version('2.44.0', commit='8b308baa3b1b0afc0855ea263630a288689e3864')
version('2.40.0', commit='cfa4acb2215da44767ab3a45845bcd587c309e74')
version('2.34.0', commit='aaa8cdd70ed2696c313f6240ffbfa044f0d97a7a')

1
var/spack/repos/builtin/packages/r-aims/package.py
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@@ -17,6 +17,7 @@ class RAims(RPackage):
bioc = "AIMS"
version('1.28.0', commit='84608df638b5694c08158ed77ad2c8a64c4e594b')
version('1.26.0', commit='5dcf60eb4cdcf563ea848482c9c488f465c27bbd')
version('1.22.0', commit='34a38978b24377abb864eff7683bb36344ff171d')
version('1.16.0', commit='86cb8c998ade3003cd34a5405b218ae07d97bf84')

1
var/spack/repos/builtin/packages/r-aldex2/package.py
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@@ -23,6 +23,7 @@ class RAldex2(RPackage):
bioc = "ALDEx2"
version('1.28.1', commit='f8d8ba6d2439bff75ab80f5466c9a047c31ed0a6')
version('1.26.0', commit='0876a2eac08d3f1c01df7414d97d391c80182ada')
version('1.22.0', commit='ac7f0ab3f094ec52713da7620a27058b14c7181d')
version('1.16.0', commit='bd698a896a5bea91187e3060e56a147bad1d586f')

1
var/spack/repos/builtin/packages/r-allelicimbalance/package.py
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@@ -14,6 +14,7 @@ class RAllelicimbalance(RPackage):
bioc = "AllelicImbalance"
version('1.34.0', commit='290708ccc4ceae1fbb9e9257cb254916449d389b')
version('1.32.0', commit='428ab8c96bb15fab45e4084da25f98b01b9d60b6')
version('1.28.0', commit='ac5d13c9ee0935bf9500ee542792644e752a1fde')
version('1.22.0', commit='04692e367e8c6aac475d06adfd7cfa629baab05a')

1
var/spack/repos/builtin/packages/r-alpine/package.py
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@@ -14,6 +14,7 @@ class RAlpine(RPackage):
bioc = "alpine"
version('1.22.0', commit='6107a82962f07e0434e93f261cd375eaaa171d91')
version('1.20.0', commit='9348ef14128aa6be10cca1987736ddbc385df7e9')
version('1.16.0', commit='aee397774ac6cd17ad45dc05be14c526647f3c13')
version('1.10.0', commit='bf22597eb2c6c6aaa26900ed4ece96ce7256e77c')

1
var/spack/repos/builtin/packages/r-altcdfenvs/package.py
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@@ -13,6 +13,7 @@ class RAltcdfenvs(RPackage):
bioc = "altcdfenvs"
version('2.58.0', commit='08255a777ffa1e1414d3dd3062d95bfdd3dfd47c')
version('2.56.0', commit='941e00b97a33662a8230991e387070324b2e76bf')
version('2.52.0', commit='21329abf82eae26f84b7c0270e81c8e089c548ce')
version('2.46.0', commit='90a11e748a5af98cabfd6670a5b7b256420d172b')

1
var/spack/repos/builtin/packages/r-anaquin/package.py
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@@ -17,6 +17,7 @@ class RAnaquin(RPackage):
bioc = "Anaquin"
version('2.20.0', commit='61598dd3430b09b57f31d7d550ea95126a2d73c8')
version('2.18.0', commit='c8e3df3e299c32daac0dda23cea59a18673d886b')
version('2.14.0', commit='d0a34c931a0e72080bff91dacb37dbbe26b45386')
version('2.8.0', commit='f591d420740b77881ae0a4c16b208c63d460c601')

1
var/spack/repos/builtin/packages/r-aneufinder/package.py
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@@ -15,6 +15,7 @@ class RAneufinder(RPackage):
bioc = "AneuFinder"
version('1.24.0', commit='4c6906eee514eba3e8ac159654a6953e37a99bba')
version('1.22.0', commit='ea0beb3d827c2dd4bc56708a839a93c55304918b')
version('1.18.0', commit='76ec9af947f97212084ca478e8e82f9e0eb79de9')
version('1.12.1', commit='e788fd0c864f0bf0abd93df44c6d42f82eb37e0e')

1
var/spack/repos/builtin/packages/r-aneufinderdata/package.py
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@@ -14,6 +14,7 @@ class RAneufinderdata(RPackage):
bioc = "AneuFinderData"
version('1.24.0', commit='cf6f3852702aab28e3170fc56b695d00b7389666')
version('1.22.0', commit='ae8eec3b0afdc351dc447aad2024df5b2c75e56b')
version('1.18.0', commit='1bf1657b28fc8c1425e611980a692da952ce3d1e')
version('1.12.0', commit='7350f38856b6278e07eca141f7f3cb24bc60c3a1')

1
var/spack/repos/builtin/packages/r-annaffy/package.py
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@@ -16,6 +16,7 @@ class RAnnaffy(RPackage):
bioc = "annaffy"
version('1.68.0', commit='fa930c0bbdca9828a130ab06d86c65d451380830')
version('1.66.0', commit='aa1afa1509754128d27508228c1f39f51a8da043')
version('1.62.0', commit='ad9c37e0e7e45e0f35c208ce528ba48000b37432')
version('1.56.0', commit='8c8e16aa0f3073880c39684fd8e554a052ec6233')

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var/spack/repos/builtin/packages/r-annotate/package.py
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@@ -13,6 +13,7 @@ class RAnnotate(RPackage):
bioc = "annotate"
version('1.74.0', commit='200c71743417792880f8171d59b2ac0ddd3902a8')
version('1.72.0', commit='67ac76a9ff6d60dc1620763d3aa98aef39443110')
version('1.68.0', commit='98cdb12c612b3f3fc06329a89a1ffb0a92b555c0')
version('1.62.0', commit='19af0b39747ea83fe8fe9b8bbb6036363bc815cd')

1
var/spack/repos/builtin/packages/r-annotationdbi/package.py
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@@ -14,6 +14,7 @@ class RAnnotationdbi(RPackage):
bioc = "AnnotationDbi"
version('1.58.0', commit='05fcf7a28a6b15b195da23474d7ba89bd0cfd891')
version('1.56.2', commit='13fdc4a93852199ca6ec120a2fe1078f9f445f67')
version('1.52.0', commit='c4e0ca9bd65362ae9cad6a98d90f54267b0ae838')
version('1.46.1', commit='ff260913741d0fcf9487eeb1f44a6c6968ced5b9')

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var/spack/repos/builtin/packages/r-annotationfilter/package.py
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@@ -15,6 +15,7 @@ class RAnnotationfilter(RPackage):
bioc = "AnnotationFilter"
version('1.20.0', commit='2818aff6502fd6fe819521cd8d97695ef6f9198e')
version('1.18.0', commit='60a9b666d7362d7ed5c357fd4a5d2744d8598c20')
version('1.14.0', commit='6ee3a13ed93a535ed452cbc8c118151a2cbb732c')
version('1.8.0', commit='9bf70ead899e32e84e2908f2b29cd38250d2d1ed')

1
var/spack/repos/builtin/packages/r-annotationforge/package.py
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@@ -14,6 +14,7 @@ class RAnnotationforge(RPackage):
bioc = "AnnotationForge"
version('1.38.0', commit='1f77750562ea3a01f0f1a46c299184fc31196ffd')
version('1.36.0', commit='523b5f0c3ffb77e59e1568e5f36a5a470bfeeae5')
version('1.32.0', commit='3d17c2a945951c02fe152e5a8a8e9c6cb41e30f7')
version('1.26.0', commit='5d181f32df1fff6446af64a2538a7d25c23fe46e')

1
var/spack/repos/builtin/packages/r-annotationhub/package.py
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@@ -20,6 +20,7 @@ class RAnnotationhub(RPackage):
bioc = "AnnotationHub"
version('3.4.0', commit='e74e54ca44f50c2c15c60f8620e3d1721f8f5b6d')
version('3.2.1', commit='ad1dfe86f0b0ea4711cc9cdb89e073e8794ec9aa')
version('2.22.0', commit='3ab7dceebbc31ac14ca931f66c662cf9538b7d0a')
version('2.16.1', commit='f8cefaae603b782e1c1ad277a3fb89d44e3aa1ed')

1
var/spack/repos/builtin/packages/r-aroma-light/package.py
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@@ -16,6 +16,7 @@ class RAromaLight(RPackage):
bioc = "aroma.light"
version('3.26.0', commit='7ead7517a77bc8b4b4b42aace69957a17e8fe016')
version('3.24.0', commit='3ff48b8f546acc9803b3c652363cac78d3b81ae5')
version('3.20.0', commit='02cde7fa166259bce73c396a87dca2ecc8249c39')
version('3.16.0', commit='fc16179fc4bee8954c5415d7cd13e3112b75b4fd')

2
var/spack/repos/builtin/packages/r-bamsignals/package.py
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@@ -16,6 +16,7 @@ class RBamsignals(RPackage):
bioc = "bamsignals"
version('1.28.0', commit='27b70be6f73747d9d32054da043f4a37ea55b917')
version('1.26.0', commit='d57643441d04f77db0907637dc9e7cd5bed5842f')
version('1.22.0', commit='5f533969c84212406bcb3ebf725ebb6d77e9947a')
version('1.16.0', commit='dba9a4ae1613d2700f122ade1e9b90ca8fce5657')
@@ -25,6 +26,7 @@ class RBamsignals(RPackage):
version('1.8.0', commit='b123b83e8e026c9ec91209d4498aff3e95a5de23')
depends_on('r@3.2.0:', type=('build', 'run'))
depends_on('r@3.5.0:', type=('build', 'run'), when='@1.28.0:')
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-rcpp@0.10.6:', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))

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var/spack/repos/builtin/packages/r-beachmat/package.py
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@@ -17,6 +17,7 @@ class RBeachmat(RPackage):
bioc = "beachmat"
version('2.12.0', commit='3e6af145bdcdf0a0b722d8256ba1a38b8a36b2f5')
version('2.10.0', commit='b7cc532d4a5b26d9073135cc9945258ea08e5079')
version('2.6.4', commit='7d9dc6379017d723dda3e8dc9fd1f6de7fd33cdb')
version('2.0.0', commit='2bdac6ce7b636fd16f78641a0bcc2181670107ab')

1
var/spack/repos/builtin/packages/r-biobase/package.py
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@@ -14,6 +14,7 @@ class RBiobase(RPackage):
bioc = "Biobase"
version('2.56.0', commit='3b2dd91b333677c2f27257c7624014a55e73c52b')
version('2.54.0', commit='8215d76ce44899e6d10fe8a2f503821a94ef6b40')
version('2.50.0', commit='9927f90d0676382f2f99e099d8d2c8e2e6f1b4de')
version('2.44.0', commit='bde2077f66047986297ec35a688751cdce150dd3')

1
var/spack/repos/builtin/packages/r-biocfilecache/package.py
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@@ -16,6 +16,7 @@ class RBiocfilecache(RPackage):
bioc = "BiocFileCache"
version('2.4.0', commit='2c00eee40d95fddad223f115f959b09e1a14f75d')
version('2.2.1', commit='cc912123408803193bf37395f4d18baa8dcd6f47')
version('1.14.0', commit='cdcde4b59ae73dda12aa225948dbd0a058d9be6d')
version('1.8.0', commit='0e3542b6aae849b01240d8055a48da1b267bd5a0')

1
var/spack/repos/builtin/packages/r-biocgenerics/package.py
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@@ -13,6 +13,7 @@ class RBiocgenerics(RPackage):
bioc = "BiocGenerics"
version('0.42.0', commit='3582d47b836387afc08157f3d6a5013fd64334ed')
version('0.40.0', commit='0bc1e0ed4d20c7101cd782a14f6373e27478acfc')
version('0.36.0', commit='0d5d169d7d64d648a22f9043837c93bc784e71ed')
version('0.34.0', commit='f7c2020')

1
var/spack/repos/builtin/packages/r-biocio/package.py
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@@ -22,6 +22,7 @@ class RBiocio(RPackage):
bioc = "BiocIO"
version('1.6.0', commit='60c8aa1a961e43bf0ee5d563a6d9fcec84f7f8f8')
version('1.4.0', commit='c335932526a38c75dbfa4970c1d90b8a21466d37')
depends_on('r@4.0.0:', type=('build', 'run'))

1
var/spack/repos/builtin/packages/r-biocneighbors/package.py
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@@ -21,6 +21,7 @@ class RBiocneighbors(RPackage):
bioc = "BiocNeighbors"
version('1.14.0', commit='670a1bd4d82636d28fbff50cea2157e16bb1a858')
version('1.12.0', commit='3c8a290f75adc944b408e6e77a36f3a0c1509c4c')
version('1.8.2', commit='889bc91f8cb45d210b47ae5c0b9cfb86fb071ca2')
version('1.2.0', commit='f754c6300f835142536a4594ddf750481e0fe273')

1
var/spack/repos/builtin/packages/r-biocparallel/package.py
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@@ -15,6 +15,7 @@ class RBiocparallel(RPackage):
bioc = "BiocParallel"
version('1.30.2', commit='e7e109f7a94dbfbc50f926be030c7ad8c1a053db')
version('1.28.3', commit='2f9d88ad83659939e7911d49c2d24d2cd599c7cc')
version('1.24.1', commit='f713caa4314ec0ddeba7fe0eb599ad417efb413f')
version('1.18.1', commit='348264af782d7dcd41a1879400f348f836767f6e')

1
var/spack/repos/builtin/packages/r-biocsingular/package.py
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@@ -17,6 +17,7 @@ class RBiocsingular(RPackage):
bioc = "BiocSingular"
version('1.12.0', commit='7d1b8f4954e9e6f2c30a5111cdab9aabc8bcc3a6')
version('1.10.0', commit='6615ae8cb124aba6507447c1081bd2eba655e57d')
version('1.6.0', commit='11baf1080d6f791439cd5d97357589d6451643d9')
version('1.0.0', commit='d2b091c072d0312698c9bb6611eb1bdf8aebf833')

1
var/spack/repos/builtin/packages/r-biocstyle/package.py
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@@ -14,6 +14,7 @@ class RBiocstyle(RPackage):
bioc = "BiocStyle"
version('2.24.0', commit='53095b534b7e6c80a33a67b5f2db0db8f00db902')
version('2.22.0', commit='86250b637afa3a3463fac939b99c0402b47876ea')
version('2.18.1', commit='956f0654e8e18882ba09305742401128c9c7d47d')
version('2.12.0', commit='0fba3fe6e6a38504f9aadcd3dc95bb83d7e92498')

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var/spack/repos/builtin/packages/r-biocversion/package.py
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@@ -14,8 +14,10 @@ class RBiocversion(RPackage):
bioc = "BiocVersion"
version('3.15.2', commit='818ab03b6a3551993b712e3702126040f9fb7600')
version('3.14.0', commit='aa56d93d0ea5dcdbf301f120502981740fd91e1e')
version('3.12.0', commit='23b971963c6b73550a7e330dab5a046d58ce0223')
depends_on('r@4.0.0:', type=('build', 'run'))
depends_on('r@4.1.0:', type=('build', 'run'), when='@3.14.0:')
depends_on('r@4.2.0:', type=('build', 'run'), when='@3.15.2:')

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var/spack/repos/builtin/packages/r-biomart/package.py
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@@ -24,6 +24,7 @@ class RBiomart(RPackage):
bioc = "biomaRt"
version('2.52.0', commit='cf4932ac02686da45ea36ff5137fa63cead8860b')
version('2.50.3', commit='83a519ac13d73dc545cb6aafde5f4b5001e9e08f')
version('2.46.2', commit='90d6abfdfa04259006f7b47efb10271ada76aec1')
version('2.40.5', commit='ed9ddafb0d620168ea8e3ab4884f3457b8525c68')
@@ -33,6 +34,7 @@ class RBiomart(RPackage):
version('2.32.1', commit='f84d74424fa599f6d08f8db4612ca09914a9087f')
depends_on('r-xml', type=('build', 'run'))
depends_on('r-xml@3.99-0.7:', type=('build', 'run'), when='@2.52.0:')
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-progress', type=('build', 'run'), when='@2.34.2:')
depends_on('r-stringr', type=('build', 'run'), when='@2.34.2:')

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var/spack/repos/builtin/packages/r-biomformat/package.py
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@@ -21,6 +21,7 @@ class RBiomformat(RPackage):
bioc = "biomformat"
version('1.24.0', commit='4e14692dbcc34c3bd51defd74c728df5de9d0829')
version('1.22.0', commit='ab7c6411a038fec010baa72e663f362fd972cb34')
version('1.18.0', commit='dc18859c139f4d76805adb6f01e199573cdd5a8b')
version('1.12.0', commit='6e946123bb59da262cbb0c17dc5ab49328a89d4a')

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var/spack/repos/builtin/packages/r-biostrings/package.py
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@@ -15,6 +15,7 @@ class RBiostrings(RPackage):
bioc = "Biostrings"
version('2.64.0', commit='c7ad3c7af607bc8fe4a5e1c37f09e6c9bf70b4f6')
version('2.62.0', commit='53ed287e03d16fa523789af3131c60375ccf587f')
version('2.58.0', commit='0ec1a5455d5e9eebd14b26228906bb04e2abb197')
version('2.52.0', commit='b78fe7c1f3cdbbb7affb1ca7164fe5a1f8b868f5')
@@ -26,6 +27,8 @@ class RBiostrings(RPackage):
depends_on('r@2.8.0:', type=('build', 'run'))
depends_on('r@3.5.0:', type=('build', 'run'), when='@2.50.2:')
depends_on('r@4.0.0:', type=('build', 'run'), when='@2.62.0:')
# Older versions do not build with r@4.2:
depends_on('r@:4.1', type=('build', 'run'), when='@:2.62.0')
depends_on('r-biocgenerics@0.15.6:', type=('build', 'run'))
depends_on('r-biocgenerics@0.31.5:', type=('build', 'run'), when='@2.58.0:')
depends_on('r-biocgenerics@0.37.0:', type=('build', 'run'), when='@2.62.0:')

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var/spack/repos/builtin/packages/r-biovizbase/package.py
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@@ -16,6 +16,7 @@ class RBiovizbase(RPackage):
bioc = "biovizBase"
version('1.44.0', commit='a8f05c56c27b278524033cb896a6c97f3ee0081c')
version('1.42.0', commit='f1627b2b567471837daca6e763acfc3e13937461')
version('1.38.0', commit='d0f3362e0ad0e90b4b1d3e47b13ed57907d03403')
version('1.32.0', commit='de044bf236cdcd71214ae7b77689a8f0ab4f5cc8')

1
var/spack/repos/builtin/packages/r-bsgenome/package.py
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@@ -14,6 +14,7 @@ class RBsgenome(RPackage):
bioc = "BSgenome"
version('1.64.0', commit='59cdebde613e9702985c003f699f4aea2b0f0e7b')
version('1.62.0', commit='9b1859e11ffa082833f035a45274af6e4e83e863')
version('1.58.0', commit='3a4926e03a7a1d7140a10c1b2bf6090808470145')
version('1.52.0', commit='5398eba1cb56a873b29c04a7ce6858d5d60ff75b')

1
var/spack/repos/builtin/packages/r-bsseq/package.py
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@@ -14,6 +14,7 @@ class RBsseq(RPackage):
bioc = "bsseq"
version('1.32.0', commit='a0c1eacbc479c57bd836e885e162c28bbe08e115')
version('1.30.0', commit='7eb5223e9ee02fd08a52be56eaa9316a67c0d66b')
version('1.26.0', commit='fae32292687625012a2938a48c93df55ad4257b5')
version('1.24.4', commit='8fe7a03')

1
var/spack/repos/builtin/packages/r-bumphunter/package.py
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@@ -13,6 +13,7 @@ class RBumphunter(RPackage):
bioc = "bumphunter"
version('1.38.0', commit='06e2fa87b342d48793d0d2f1f7d94a95a6613995')
version('1.36.0', commit='db50fcf7798c2eddfe48fd510d081dda82f2ee4e')
version('1.32.0', commit='b7d39c2a6385ca217dceefc918b3ccd5c31bbaa0')
version('1.26.0', commit='606bee8708a0911ced3efb197970b4c9fa52f2fa')

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var/spack/repos/builtin/packages/r-category/package.py
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@@ -14,6 +14,7 @@ class RCategory(RPackage):
bioc = "Category"
version('2.62.0', commit='0fe801c0c443aebd5d4cefa8c30e4e7d0931b673')
version('2.60.0', commit='55210d8c539474954d18cf913a219dce883eac2e')
version('2.56.0', commit='ad478caa9d693dbc2770608e79dd852375b9a223')
version('2.50.0', commit='d96f0b29cb778f6697b44d7ba7b0abd7086074a9')

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var/spack/repos/builtin/packages/r-champ/package.py
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@@ -16,6 +16,7 @@ class RChamp(RPackage):
bioc = "ChAMP"
version('2.26.0', commit='1548910bf53e1e5f7a8d80c83b742a94297d8a34')
version('2.24.0', commit='7ba19da74b61e1c40ced162ba753f0f9b9c7647a')
version('2.20.1', commit='99ea0463bce59f5b06bcc91f479dcd4065074896')

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var/spack/repos/builtin/packages/r-champdata/package.py
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@@ -14,6 +14,7 @@ class RChampdata(RPackage):
bioc = "ChAMPdata"
version('2.28.0', commit='601555bf599828b6cfa125beffa51aebccdc8503')
version('2.26.0', commit='ea7882707921af33eefab5133a1ccd4a409f045d')
version('2.22.0', commit='eeedd4c477fac79f00743da8ff7da064221c5f3d')

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var/spack/repos/builtin/packages/r-chipseq/package.py
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@@ -15,6 +15,7 @@ class RChipseq(RPackage):
maintainers = ['dorton21']
version('1.46.0', commit='76b00397cd117d5432158f50fc1032d50485bd24')
version('1.44.0', commit='b64d0d28e9fcf0fdab9a7f9c521baf729426a594')
version('1.40.0', commit='84bcbc0b7ad732730b5989a308f1624a6a358df1')

1
var/spack/repos/builtin/packages/r-clusterprofiler/package.py
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@@ -15,6 +15,7 @@ class RClusterprofiler(RPackage):
bioc = "clusterProfiler"
version('4.4.1', commit='daad11fb80be2dd9b825e0b484815a0a2b1592a4')
version('4.2.2', commit='4ebb9de8e03eedc971f54a57cf5bf1b250ed43d5')
version('3.18.0', commit='064a6e612ce27e260e33af78b907bee4065ff821')
version('3.12.0', commit='6ec88d10832bdfd938e9c065b377015eedb7eee2')

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var/spack/repos/builtin/packages/r-cner/package.py
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@@ -14,6 +14,7 @@ class RCner(RPackage):
bioc = "CNEr"
version('1.32.0', commit='1c92f3d7f3dccf76ab7d54f286117b09bc470b8f')
version('1.30.0', commit='e682f2a7c8ebb561c872cf51a58ba36eed341187')
version('1.26.0', commit='e5e582da6feeae0618c4460f16ece724215e3b20')
version('1.20.0', commit='9c25d8e8f6f5fd8a5311f554c86e7ca1140a4ca5')

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var/spack/repos/builtin/packages/r-codex/package.py
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@@ -22,6 +22,7 @@ class RCodex(RPackage):
bioc = "CODEX"
version('1.28.0', commit='c707497bd93aa4a0516fcf3671a64997c28c9f67')
version('1.26.0', commit='729fd10bd42d12edcedd65b5a8fb1579e5949718')
version('1.22.0', commit='aa0ee4278111a46e0c790312b0526ba07aab22eb')
version('1.18.0', commit='9a95cccc7ff3fe587636317e21e39a07dddf80bc')

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var/spack/repos/builtin/packages/r-complexheatmap/package.py
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@@ -16,6 +16,7 @@ class RComplexheatmap(RPackage):
bioc = "ComplexHeatmap"
version('2.12.0', commit='8a5f060b06646f9d6a5032832ea72e3f183ca5d7')
version('2.10.0', commit='170df82a1568e879e4019e0ff6feb0047851684f')
version('2.6.2', commit='0383bada2c76dc3dde71cf6a625016b619aec4d3')
version('2.0.0', commit='97863d8ddfe36a52df0149b0b040dc386a03d2e4')
@@ -29,6 +30,7 @@ class RComplexheatmap(RPackage):
depends_on('r-circlize@0.3.4:', type=('build', 'run'))
depends_on('r-circlize@0.4.1:', type=('build', 'run'), when='@1.17.1:')
depends_on('r-circlize@0.4.5:', type=('build', 'run'), when='@2.0.0:')
depends_on('r-circlize@0.4.14:', type=('build', 'run'), when='@2.12.0:')
depends_on('r-getoptlong', type=('build', 'run'))
depends_on('r-colorspace', type=('build', 'run'))
depends_on('r-clue', type=('build', 'run'), when='@2.0.0:')
@@ -41,6 +43,7 @@ class RComplexheatmap(RPackage):
depends_on('r-matrixstats', type=('build', 'run'), when='@2.6.2:')
depends_on('r-foreach', type=('build', 'run'), when='@2.10.0:')
depends_on('r-doparallel', type=('build', 'run'), when='@2.10.0:')
depends_on('r-codetools', type=('build', 'run'), when='@2.12.0:')
depends_on('r-dendextend@1.0.1:', type=('build', 'run'), when='@1.14.0:1.17.1')
depends_on('r-s4vectors@0.26.1:', type=('build', 'run'), when='@2.6.2')

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var/spack/repos/builtin/packages/r-ctc/package.py
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@@ -14,6 +14,7 @@ class RCtc(RPackage):
bioc = "ctc"
version('1.70.0', commit='05dc046ecfddbc1eeadf77e8f3ec0ce054794437')
version('1.68.0', commit='c2733534ef9d948e07ea654d1998a67ed8f7a98a')
version('1.64.0', commit='35dbe620a21056b8f69890e6f9a7c320528d8621')
version('1.58.0', commit='c41df03ac149db20c5e337142142d61cfb9b43fb')

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var/spack/repos/builtin/packages/r-decipher/package.py
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@@ -13,6 +13,7 @@ class RDecipher(RPackage):
bioc = "DECIPHER"
version('2.24.0', commit='437e60005ab281bd836f47756a367795bc16755d')
version('2.22.0', commit='45da5cab5869d83af797aa82b08ebcd24f5bdab3')
version('2.18.1', commit='6a708421550e6705d05e2fb50a0f5ab4f9041cb0')
version('2.12.0', commit='658ae23870383b25b96a03a18d4ecac228a2650f')

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var/spack/repos/builtin/packages/r-delayedarray/package.py
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@@ -20,6 +20,7 @@ class RDelayedarray(RPackage):
bioc = "DelayedArray"
version('0.22.0', commit='4a5afd117b189b40bd409c7aff60e09d41797472')
version('0.20.0', commit='829b52916ec54bb4f1a3c6f06c9955f3e28b3592')
version('0.16.1', commit='c95eba771ad3fee1b49ec38c51cd8fd1486feadc')
version('0.10.0', commit='4781d073110a3fd1e20c4083b6b2b0f260d0cb0a')

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var/spack/repos/builtin/packages/r-delayedmatrixstats/package.py
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@@ -18,6 +18,7 @@ class RDelayedmatrixstats(RPackage):
bioc = "DelayedMatrixStats"
version('1.18.0', commit='50c9aab259b6e8f68abf44b78122662a41c8bf47')
version('1.16.0', commit='d44a3d765769cb022193428a77af25bf19916be7')
version('1.12.3', commit='2b3091dfa9b3bab914e3a4157182063714ba86ae')
version('1.6.1', commit='4378d1898a403305a94b122c4f36d1215fa7708d')

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var/spack/repos/builtin/packages/r-deseq2/package.py
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@@ -17,6 +17,7 @@ class RDeseq2(RPackage):
homepage = "https://bioconductor.org/packages/DESeq2"
git = "https://git.bioconductor.org/packages/DESeq2.git"
version('1.36.0', commit='2800b78ae52c0600f7e603c54af59beed3a2ed17')
version('1.34.0', commit='25d4f74be59548122ccfbe8687d30c0bae5cf49a')
version('1.30.0', commit='f4b47b208ee26ab23fe65c345f907fcfe70b3f77')
version('1.24.0', commit='3ce7fbbebac526b726a6f85178063d02eb0314bf')

1
var/spack/repos/builtin/packages/r-dexseq/package.py
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@@ -21,6 +21,7 @@ class RDexseq(RPackage):
maintainers = ['dorton21']
version('1.42.0', commit='d91de62a27d0cab2ef12ef1a5f23dc2f7a0cfadd')
version('1.40.0', commit='7d2d639b3a157e443058fc557132cd2629bb36f3')
version('1.36.0', commit='f0a361af6954fcc2abb2db801c26e303570669b2')

1
var/spack/repos/builtin/packages/r-dirichletmultinomial/package.py
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@@ -18,6 +18,7 @@ class RDirichletmultinomial(RPackage):
bioc = "DirichletMultinomial"
version('1.38.0', commit='b4de83d354e974fdb7cb3526d029487f24aab670')
version('1.36.0', commit='926baff6c75cb498945c5895f25cc143c907a357')
version('1.32.0', commit='6949abab2462b2c09f7a0ca5b5cbf0c95a40ad16')
version('1.26.0', commit='7daa84948020811bb8a27d2e633fccfdcdd1018f')

1
var/spack/repos/builtin/packages/r-dmrcate/package.py
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@@ -17,6 +17,7 @@ class RDmrcate(RPackage):
bioc = "DMRcate"
version('2.10.0', commit='81e83701da5c55ac83d0e0b5e640a9d431f09551')
version('2.8.5', commit='c65dc79a33a047c10932a98b3383709a6bcb8903')
version('2.4.1', commit='bc6242a0291a9b997872f575a4417d38550c9550')

1
var/spack/repos/builtin/packages/r-dnacopy/package.py
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@@ -15,6 +15,7 @@ class RDnacopy(RPackage):
bioc = "DNAcopy"
version('1.70.0', commit='9595d0ad7c78af4ed568cbd210b894d3350eae0a')
version('1.68.0', commit='08f039f58bc2f5ed2cc3117ae817dbac333002a6')
version('1.64.0', commit='01650266ea7a4e5c600de545fe70a1103e79b2d8')
version('1.58.0', commit='1954745eafca990d6ddeefe84059c54a8c37df23')

1
var/spack/repos/builtin/packages/r-dose/package.py
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@@ -18,6 +18,7 @@ class RDose(RPackage):
bioc = "DOSE"
version('3.22.0', commit='242ac1b746c44fbbf281fbe6e5e4424a8dc74375')
version('3.20.1', commit='bf434f24d035217822cb1b0ab08a486b9a53edb4')
version('3.16.0', commit='a534a4f2ef1e54e8b92079cf1bbedb5042fd90cd')
version('3.10.2', commit='5ea51a2e2a04b4f3cc974cecb4537e14efd6a7e3')

6
var/spack/repos/builtin/packages/r-dss/package.py
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@@ -18,6 +18,7 @@ class RDss(RPackage):
bioc = "DSS"
version('2.44.0', commit='b9f44106f139c93564dfb4afab50555d24a657ba')
version('2.42.0', commit='33e87450fbb64bb3e321688ff613e83cd40efe48')
version('2.38.0', commit='82e65b92e6e227f1f99620362db8b03059e07e98')
version('2.36.0', commit='841c7ed')
@@ -25,7 +26,10 @@ class RDss(RPackage):
version('2.32.0', commit='ffb502d')
depends_on('r@3.3:', type=('build', 'run'))
depends_on('r@3.5.0:', type=('build', 'run'), when='@2.44.0:')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-biocparallel', type=('build', 'run'), when='@2.36.0:')
depends_on('r-bsseq', type=('build', 'run'))
depends_on('r-delayedarray', type=('build', 'run'), when='@2.36.0:')
depends_on('r-matrixstats', type=('build', 'run'), when='@2.44.0:')
depends_on('r-delayedarray', type=('build', 'run'), when='@2.36.0:2.42.0')

1
var/spack/repos/builtin/packages/r-edger/package.py
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@@ -19,6 +19,7 @@ class REdger(RPackage):
bioc = "edgeR"
version('3.38.1', commit='e58bf52f34ec451096f593126922ad7e5d517f7e')
version('3.36.0', commit='c7db03addfc42138a1901834409c02da9d873026')
version('3.32.1', commit='b881d801d60e5b38413d27f149384c218621c55a')
version('3.26.8', commit='836809e043535f2264e5db8b5c0eabcffe85613f')

1
var/spack/repos/builtin/packages/r-enrichplot/package.py
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@@ -16,6 +16,7 @@ class REnrichplot(RPackage):
bioc = "enrichplot"
version('1.16.1', commit='cff77b622b2312be546714ec437aa4bc585bac87')
version('1.14.1', commit='ccf3a6d9b7cd9cffd8de6d6263efdffe59d2ec36')
version('1.10.2', commit='77ee04f60a07cc31151f8f47f8ee64f3a43c9760')
version('1.4.0', commit='6ffe5d9c5dbe5cbea29f2e0941595475bbbcea0e')

2
var/spack/repos/builtin/packages/r-ensembldb/package.py
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@@ -24,6 +24,7 @@ class REnsembldb(RPackage):
bioc = "ensembldb"
version('2.20.1', commit='e547d184730cfe5e65f59e4f3512395fb1cdba1a')
version('2.18.3', commit='e2fcfc0c7700110df070a171d2d542b37ec098f3')
version('2.14.0', commit='c7150519ed4ef38e5eac1043209863dbc7be43a1')
version('2.8.1', commit='a4d8d89c143dca86b364d59dff8e46cc81c41ac0')
@@ -32,6 +33,7 @@ class REnsembldb(RPackage):
version('2.2.2', commit='d71610e58aed88dbbe6a74e7a8ddfb7451398060')
version('2.0.4', commit='514623d71e3cca7a4e547adb579b5a958702ef86')
depends_on('r@3.5.0:', type=('build', 'run'), when='@2.20.1:')
depends_on('r-biocgenerics@0.15.10:', type=('build', 'run'))
depends_on('r-genomicranges@1.23.21:', type=('build', 'run'))
depends_on('r-genomicranges@1.31.18:', type=('build', 'run'), when='@2.4.1:')

1
var/spack/repos/builtin/packages/r-exomecopy/package.py
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@@ -17,6 +17,7 @@ class RExomecopy(RPackage):
bioc = "exomeCopy"
version('1.42.0', commit='ba0979cf5fbdefed841022f2dc0604941315c1b8')
version('1.40.0', commit='ebde39be67baace2c326359421fd17f4a02fd4fe')
version('1.36.0', commit='cbe3134acbbc9b7d5426ae2f142dc64cadb3fc26')
version('1.32.0', commit='c9a884427d91b6d62ddc16a939bd808e389d3ea6')

2
var/spack/repos/builtin/packages/r-experimenthub/package.py
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@@ -18,11 +18,13 @@ class RExperimenthub(RPackage):
bioc = "ExperimentHub"
version('2.4.0', commit='bdce35d3a89e8633cc395f28991e6b5d1eccbe8e')
version('2.2.1', commit='4e10686fa72baefef5d2990f41a7c44c527a7a7d')
version('1.16.1', commit='61d51b7ca968d6cc1befe299e0784d9a19ca51f6')
depends_on('r-biocgenerics@0.15.10:', type=('build', 'run'))
depends_on('r-annotationhub@2.19.3:', type=('build', 'run'))
depends_on('r-annotationhub@3.3.6:', type=('build', 'run'), when='@2.4.0:')
depends_on('r-biocfilecache@1.5.1:', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-biocmanager', type=('build', 'run'))

1
var/spack/repos/builtin/packages/r-fgsea/package.py
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@@ -16,6 +16,7 @@ class RFgsea(RPackage):
bioc = "fgsea"
version('1.22.0', commit='e4e203aa64faa984e0406fed5d87a422d9df92f2')
version('1.20.0', commit='b704f81687dc16afdaafc6d30108c62a067856b2')
version('1.16.0', commit='9d9df596c7e160afa18e067b7637cfc465494318')
version('1.10.1', commit='fb06a6ebfb4a195e77e37226d100a2148b90c5f3')

1
var/spack/repos/builtin/packages/r-gcrma/package.py
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@@ -13,6 +13,7 @@ class RGcrma(RPackage):
bioc = "gcrma"
version('2.68.0', commit='c14063ff5490fac8d60530826613d728e68b3d66')
version('2.66.0', commit='ba134b392def89d36b5639a187e0c25a4353457b')
version('2.62.0', commit='b91bdf5bf4e875defedb4d4e3e1e75867773287a')
version('2.56.0', commit='1f37bbfb4d3ed542b1e90704ab0fa8914d5e0224')

1
var/spack/repos/builtin/packages/r-gdsfmt/package.py
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@@ -24,6 +24,7 @@ class RGdsfmt(RPackage):
bioc = "gdsfmt"
version('1.32.0', commit='06f2097cc10b1888739f86e635383a0f2ee7e208')
version('1.30.0', commit='d27dde6a70bb2295f5bbc8961152b45ccee7a652')
version('1.26.1', commit='bd180b21b1ace120035f0da255cbf6f13088f069')
version('1.20.0', commit='b1fbaba0a5ace3dc45daecc85168651cd85dce00')

2
var/spack/repos/builtin/packages/r-genefilter/package.py
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@@ -13,6 +13,7 @@ class RGenefilter(RPackage):
bioc = "genefilter"
version('1.78.0', commit='2f574388971641d3a71858f5c34606c04fcd2ba2')
version('1.76.0', commit='8d630fd25f0d2a4101e05e123c3959591203a7ea')
version('1.72.1', commit='b01b00a766982ef7d80b90a252085c8c4f085e1b')
version('1.72.0', commit='8cb0b2e73531a417d53e5625bcf436265cdbe101')
@@ -22,6 +23,7 @@ class RGenefilter(RPackage):
version('1.60.0', commit='c98f695253c330a9380b2b4ffa27f3b7d66773e4')
version('1.58.1', commit='ace2556049677f60882adfe91f8cc96791556fc2')
depends_on('r-biocgenerics', type=('build', 'run'), when='@1.78.0:')
depends_on('r-biocgenerics@0.31.2:', type=('build', 'run'), when='@1.68.0:')
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-annotate', type=('build', 'run'))

1
var/spack/repos/builtin/packages/r-genelendatabase/package.py
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@@ -14,6 +14,7 @@ class RGenelendatabase(RPackage):
bioc = "geneLenDataBase"
version('1.32.0', commit='eaa193a2c6d502c6d59113fd42f66761b8730594')
version('1.30.0', commit='b3cc755f1ffcbb2eacd9ea45e11f39f1639782b1')
version('1.26.0', commit='2724715ae23a6647d1c0c6e934720aad9377d65e')
version('1.20.0', commit='70a1abed00ee68f7bfa07c42c011f9edae9915e4')

1
var/spack/repos/builtin/packages/r-genemeta/package.py
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@@ -14,6 +14,7 @@ class RGenemeta(RPackage):
bioc = "GeneMeta"
version('1.68.0', commit='4213c0205d477660195300a0aa9751972f86bf91')
version('1.66.0', commit='c16eb09492f08f6cc0f253fafa3fa5dce35dcdba')
version('1.62.0', commit='eb4273ff5867e39592f50b97b454fa5e32b4a9bf')
version('1.56.0', commit='cb2c9e353d34ea9f3db06cb236c7a89674f2682d')

1
var/spack/repos/builtin/packages/r-geneplotter/package.py
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@@ -13,6 +13,7 @@ class RGeneplotter(RPackage):
bioc = "geneplotter"
version('1.74.0', commit='ca819565829eac7a9a98e3cafafd6c06a466fddf')
version('1.72.0', commit='57a1d830ba7844fda5236af0153d5b5587634f96')
version('1.68.0', commit='f1fea7e468fb24fdfa93ef4493600a4d8d183f69')
version('1.62.0', commit='1fbaddde11014b453b131860409f89cd784e8e48')

1
var/spack/repos/builtin/packages/r-genie3/package.py
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@@ -14,6 +14,7 @@ class RGenie3(RPackage):
bioc = "GENIE3"
version('1.18.0', commit='f16b25ef50978a4a497eb2f911e21f2e839fa33c')
version('1.16.0', commit='5543b1b883d3a1c92e955de6668444278edc2bdf')
version('1.12.0', commit='14289cee9bed113ab35ba03bcaac4a30e5784497')
version('1.6.0', commit='d6a49182e098342afe77f01c322dfc7b72450502')

1
var/spack/repos/builtin/packages/r-genomeinfodb/package.py
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@@ -17,6 +17,7 @@ class RGenomeinfodb(RPackage):
bioc = "GenomeInfoDb"
version('1.32.2', commit='2e40af38f00ee86d2c83d140e234c1349baa27de')
version('1.30.1', commit='bf8b385a2ffcecf9b41e581794056f267895863d')
version('1.26.2', commit='96dd27a7e3ef476790b1475aab50dbbed7df67a2')
version('1.20.0', commit='ea771e3b429ef17fb912fb37333556c6f77f2265')

3
var/spack/repos/builtin/packages/r-genomeinfodbdata/package.py
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@@ -13,6 +13,9 @@ class RGenomeinfodbdata(RPackage):
bioc = "GenomeInfoDbData"
url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/GenomeInfoDbData_0.99.0.tar.gz"
version('1.2.8',
url='https://bioconductor.org/packages/3.15/data/annotation/src/contrib/GenomeInfoDbData_1.2.8.tar.gz',
sha256='576750330a011c1eccb47c7154ca1b40ae4cd473fd7973f6c2955237a0729eb4')
version('1.2.7',
url='https://bioconductor.org/packages/3.14/data/annotation/src/contrib/GenomeInfoDbData_1.2.7.tar.gz',
sha256='217cbad0dd3ed8f0da6b21c7d35df5737bcbd21e317ca71d2fb6ec4c316b1987')

1
var/spack/repos/builtin/packages/r-genomicalignments/package.py
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@@ -16,6 +16,7 @@ class RGenomicalignments(RPackage):
bioc = "GenomicAlignments"
version('1.32.0', commit='7a660a914a04e2eb0758082b6f64c4124a887ef3')
version('1.30.0', commit='2d2c5fce3529c2962fdcefd736d8b7f7c0ec2d54')
version('1.26.0', commit='6c74c74ee53efcd880171126366fee4bd72357bc')
version('1.20.1', commit='9dce402071e4cd945de7ff82ea574c79993625fd')

2
var/spack/repos/builtin/packages/r-genomicfeatures/package.py
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@@ -20,6 +20,7 @@ class RGenomicfeatures(RPackage):
bioc = "GenomicFeatures"
version('1.48.3', commit='b0ddea0e101e3861928f3ad353348df047d90382')
version('1.46.4', commit='d3ab6fd069624904ce7fcdf75dad884473f97975')
version('1.42.1', commit='2e82891974138b0e976799d64a8938f0be61284d')
version('1.36.4', commit='28082ec465c91ccaec6881ff348b380edac1b555')
@@ -28,6 +29,7 @@ class RGenomicfeatures(RPackage):
version('1.30.3', commit='496bbf81beebd7c934b8d3dcea001e3e4a7d7dee')
version('1.28.5', commit='ba92381ae93cb1392dad5e6acfab8f6c1d744834')
depends_on('r@3.5.0:', type=('build', 'run'), when='@1.48.3:')
depends_on('r-biocgenerics@0.1.0:', type=('build', 'run'))
depends_on('r-s4vectors@0.9.47:', type=('build', 'run'))
depends_on('r-s4vectors@0.17.29:', type=('build', 'run'), when='@1.32.3:')

1
var/spack/repos/builtin/packages/r-genomicranges/package.py
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@@ -22,6 +22,7 @@ class RGenomicranges(RPackage):
bioc = "GenomicRanges"
version('1.48.0', commit='2bce60814db7c20949892587740fb484aa435978')
version('1.46.1', commit='e422642f64815cdfee8fc340681ad87a7eafc3bb')
version('1.42.0', commit='32baca734b599d60fa13bdbe31c5712e648f538d')
version('1.36.1', commit='418e7e5647dd54d81b804455ddfcbc027fd0164a')

6
var/spack/repos/builtin/packages/r-geoquery/package.py
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@@ -16,6 +16,7 @@ class RGeoquery(RPackage):
bioc = "GEOquery"
version('2.64.2', commit='e9b7f075a4a6a952660443ca93ed392d7a4fd6d7')
version('2.62.2', commit='1966c108fe8a58ac39ef53c3c452fd160efa526e')
version('2.58.0', commit='6332ca3791ddcfb233b9ad75b5904b3d60f49b93')
version('2.52.0', commit='3059331eb82ad4947c2d1bef86ff9526e70af643')
@@ -25,7 +26,6 @@ class RGeoquery(RPackage):
version('2.42.0', commit='c26adef8d3ddbd6932a3170f2f84f6e4327641fb')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-httr', type=('build', 'run'))
depends_on('r-readr', type=('build', 'run'), when='@2.46.15:')
depends_on('r-readr@1.3.1:', type=('build', 'run'), when='@2.50.5:')
depends_on('r-xml2', type=('build', 'run'), when='@2.46.15:')
@@ -33,8 +33,10 @@ class RGeoquery(RPackage):
depends_on('r-data-table', type=('build', 'run'), when='@2.62.2:')
depends_on('r-tidyr', type=('build', 'run'), when='@2.46.15:')
depends_on('r-magrittr', type=('build', 'run'), when='@2.46.15:')
depends_on('r-r-utils', type=('build', 'run'), when='@2.62.2:')
depends_on('r-limma', type=('build', 'run'), when='@2.46.15:')
depends_on('r-curl', type=('build', 'run'), when='@2.64.2:')
depends_on('r-r-utils', type=('build', 'run'), when='@2.62.2:')
depends_on('r-xml', type=('build', 'run'), when='@2.42.0')
depends_on('r-rcurl', type=('build', 'run'), when='@2.42.0')
depends_on('r-httr', type=('build', 'run'), when='@:2.62.2')

1
var/spack/repos/builtin/packages/r-ggbio/package.py
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@@ -21,6 +21,7 @@ class RGgbio(RPackage):
bioc = "ggbio"
version('1.44.0', commit='cb21284a9803917fa76e116adfc456525c95f660')
version('1.42.0', commit='3540047ef018957d59fba8af7d3c58e4659f8e26')
version('1.38.0', commit='c39c51993f419cfc2f094e664477f25f5212a242')
version('1.32.0', commit='04bd12fbe0b1c5c6b721a5f927e1352765f9bf88')

4
var/spack/repos/builtin/packages/r-ggtree/package.py
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@@ -16,19 +16,23 @@ class RGgtree(RPackage):
bioc = "ggtree"
version('3.4.0', commit='23f08a3da1829d1bbb6827ed1c4cf878daa4b539')
version('3.2.1', commit='d3747e636fe1a6a9e09b56a3a3899208ebd05547')
depends_on('r@3.5.0:', type=('build', 'run'))
depends_on('r-ape', type=('build', 'run'))
depends_on('r-aplot@0.0.4:', type=('build', 'run'))
depends_on('r-aplot', type=('build', 'run'), when='@3.4.0:')
depends_on('r-dplyr', type=('build', 'run'))
depends_on('r-ggplot2@3.0.0:', type=('build', 'run'))
depends_on('r-magrittr', type=('build', 'run'))
depends_on('r-purrr', type=('build', 'run'))
depends_on('r-rlang', type=('build', 'run'))
depends_on('r-ggfun', type=('build', 'run'))
depends_on('r-ggfun@0.0.6:', type=('build', 'run'), when='@3.4.0:')
depends_on('r-yulab-utils', type=('build', 'run'))
depends_on('r-tidyr', type=('build', 'run'))
depends_on('r-tidytree@0.2.6:', type=('build', 'run'))
depends_on('r-tidytree@0.3.9:', type=('build', 'run'), when='@3.4.0:')
depends_on('r-treeio@1.8.0:', type=('build', 'run'))
depends_on('r-scales', type=('build', 'run'))

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var/spack/repos/builtin/packages/r-glimma/package.py
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@@ -17,6 +17,7 @@ class RGlimma(RPackage):
bioc = "Glimma"
version('2.6.0', commit='23220d9b90476059aab035b5de11b7ce04b331c8')
version('2.4.0', commit='caa270e44ec6994035d2e915c0f68a14ccbb58db')
version('2.0.0', commit='40bebaa79e8c87c5686cff7285def4461c11bca9')
version('1.12.0', commit='d02174239fe0b47983d6947ed42a1a53b24caecb')

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