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new package: r-signac (#31703)

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Also includes new package depdendency for r-rcpproll.
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Glenn Johnson 2022-07-28 17:14:45 -05:00 committed by GitHub
parent 519e7e0bb0
commit 1cb6836614
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RRcpproll(RPackage):
"""Efficient Rolling / Windowed Operations.
Provides fast and efficient routines for common rolling / windowed
operations. Routines for the efficient computation of windowed mean,
median, sum, product, minimum, maximum, standard deviation and variance are
provided."""
cran = "RcppRoll"
version('0.3.0', sha256='cbff2096443a8a38a6f1dabf8c90b9e14a43d2196b412b5bfe5390393f743f6b')
depends_on('r@2.15.1:', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))

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var/spack/repos/builtin/packages/r-signac/package.py Normal file
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RSignac(RPackage):
"""Analysis of Single-Cell Chromatin Data.
A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell
chromatin data, computing per-cell quality control metrics, dimension
reduction and normalization, visualization, and DNA sequence motif
analysis. Reference: Stuart et al. (2021)
<doi:10.1038/s41592-021-01282-5>."""
cran = "Signac"
version('1.7.0', sha256='5e4456eeab29fa2df7f6236b050dec8cb9c073d7652a89ee5030a27f94e5e4bf')
depends_on('r@4.0.0:', type=('build', 'run'))
depends_on('r-genomeinfodb@1.29.3:', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))
depends_on('r-rsamtools', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-seuratobject@4.0.0:', type=('build', 'run'))
depends_on('r-data-table', type=('build', 'run'))
depends_on('r-dplyr@1.0.0:', type=('build', 'run'))
depends_on('r-future', type=('build', 'run'))
depends_on('r-future-apply', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-irlba', type=('build', 'run'))
depends_on('r-pbapply', type=('build', 'run'))
depends_on('r-tidyr', type=('build', 'run'))
depends_on('r-patchwork', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-stringi', type=('build', 'run'))
depends_on('r-fastmatch', type=('build', 'run'))
depends_on('r-rcpproll', type=('build', 'run'))
depends_on('r-scales', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))
depends_on('r-tidyselect', type=('build', 'run'))
depends_on('r-vctrs', type=('build', 'run'))