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mitofates: new package and dependency libsvm (#4741)

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Audrey Thoma 2017-07-13 07:44:44 -05:00 committed by Adam J. Stewart
parent 5ac2020c98
commit 1ecb389dcb
2 changed files with 84 additions and 0 deletions
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var/spack/repos/builtin/packages/libsvm/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Libsvm(MakefilePackage):
"""Libsvm is a simple, easy-to-use, and efficient software for SVM
classification and regression."""
homepage = "https://www.csie.ntu.edu.tw/~cjlin/libsvm/"
url = "https://github.com/cjlin1/libsvm/archive/v322.tar.gz"
version('322', 'd9617d29efad013573f63ca9a517f490')
def install(self, spec, prefix):
mkdirp(prefix.bin)
mkdirp(prefix.lib)
install('svm-predict', prefix.bin)
install('svm-scale', prefix.bin)
install('svm-train', prefix.bin)
install('svm.o', prefix.lib)

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var/spack/repos/builtin/packages/mitofates/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Mitofates(Package):
"""MitoFates predicts mitochondrial presequence, a cleavable localization
signal located in N-terminal, and its cleaved position."""
homepage = "http://mitf.cbrc.jp/MitoFates/cgi-bin/top.cgi"
url = "http://mitf.cbrc.jp/MitoFates/program/MitoFates_1.2.tar.gz"
version('1.2', 'aaac42a8e8c7318a4abde9df3a4b72d1')
depends_on('libsvm')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install('MitoFates.pl', prefix)