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New package: py-scanpy (#32565)

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* [py-scanpy] New package

* [py-scanpy] Added types

* [py-scan] reworked dependencies

* [py-scanpy] flake8

* [py-scanpy] update import

* [py-scanpy] fixed minor issues

Co-authored-by: James A Zilberman <jazrc@rit.edu>
This commit is contained in:
Jen Herting
2022-10-06 04:27:37 -04:00
committed by GitHub
parent aab5bcf05a
commit 1f5729644b
1 changed files with 40 additions and 0 deletions
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var/spack/repos/builtin/packages/py-scanpy/package.py Normal file
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyScanpy(PythonPackage):
"""Scanpy is a scalable toolkit for analyzing single-cell
gene expression data built jointly with anndata."""
homepage = "https://scanpy.readthedocs.io/en/stable/"
pypi = "scanpy/scanpy-1.9.1.tar.gz"
version("1.9.1", sha256="00c9a83b649da7e0171c91e9a08cff632102faa760614fd05cd4d1dbba4eb541")
depends_on("python@3.7:", type=("build", "run"))
depends_on("py-setuptools-scm", type="build")
depends_on("py-flit-core@3.4:3", type="build")
depends_on("py-importlib-metadata@0.7:", type=("build", "run"), when="^python@:3.7")
depends_on("py-tomli", type="build")
depends_on("py-packaging", type=("build", "run"))
depends_on("py-anndata@0.7.4:", type=("build", "run"))
depends_on("py-numpy@1.17.0:", type=("build", "run"))
depends_on("py-matplotlib@3.4:", type=("build", "run"))
depends_on("py-pandas@1.0:", type=("build", "run"))
depends_on("py-scipy@1.4:", type=("build", "run"))
depends_on("py-seaborn", type=("build", "run"))
depends_on("py-h5py@3:", type=("build", "run"))
depends_on("py-tqdm", type=("build", "run"))
depends_on("py-scikit-learn@0.22:", type=("build", "run"))
depends_on("py-statsmodels@0.10.0:", type=("build", "run"))
depends_on("py-patsy", type=("build", "run"))
depends_on("py-networkx@2.3:", type=("build", "run"))
depends_on("py-natsort", type=("build", "run"))
depends_on("py-joblib", type=("build", "run"))
depends_on("py-numba@0.41.0:", type=("build", "run"))
depends_on("py-umap-learn@0.3.10:", type=("build", "run"))
depends_on("py-session-info", type=("build", "run"))