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pipits: new package (#5041)

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* pipits: new package and dependencies

* fixing rdp-classifier java dep

* adding resources to pipits and fixing deps for py-biom-format
This commit is contained in:
Audrey Thoma
2017-08-09 15:04:21 -05:00
committed by Adam J. Stewart
parent 79f9548a9a
commit 1f578c5777
4 changed files with 217 additions and 0 deletions
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var/spack/repos/builtin/packages/py-biom-format/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyBiomFormat(PythonPackage):
"""The BIOM file format (canonically pronounced biome) is designed to be
a general-use format for representing biological sample by observation
contingency tables."""
homepage = "https://pypi.python.org/pypi/biom-format/2.1.6"
url = "https://pypi.io/packages/source/b/biom-format/biom-format-2.1.6.tar.gz"
version('2.1.6', '1dd4925b74c56e8ee864d5e1973068de')
variant('h5py', default=True, description='For use with BIOM 2.0+ files')
depends_on('py-setuptools', type='build')
depends_on('py-cython', type='build')
depends_on('py-h5py', type=('build', 'run'), when='+h5py')
depends_on('py-click', type=('build', 'run'))
depends_on('py-numpy@1.3.0:', type=('build', 'run'))
depends_on('py-future@0.16.0:', type=('build', 'run'))
depends_on('py-scipy@0.13.0:', type=('build', 'run'))
depends_on('py-pandas@0.19.2:', type=('build', 'run'))
depends_on('py-six@1.10.0:', type=('build', 'run'))