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tabix: new package (#4886)

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* tabix: new package

* fixed docs location
This commit is contained in:
Audrey Thoma 2017-07-25 13:02:08 -05:00 committed by Adam J. Stewart
parent 5184dda309
commit 20ab66a2e9
1 changed files with 50 additions and 0 deletions
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var/spack/repos/builtin/packages/tabix/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Tabix(MakefilePackage):
"""Generic indexer for TAB-delimited genome position files"""
homepage = "https://github.com/samtools/tabix"
url = "https://github.com/samtools/tabix"
version('2013-12-16', git='https://github.com/samtools/tabix.git', commit='1ae158ac79b459f5feeed7490c67519b14ce9f35')
depends_on('perl', type=('build', 'run'))
depends_on('python', type=('build', 'run'))
def install(self, spec, prefix):
mkdirp(prefix.bin)
mkdirp(prefix.share.man.man1)
install('tabix', prefix.bin)
install('bgzip', prefix.bin)
install('tabix.py', prefix.bin)
install('tabix.1', prefix.share.man.man1)
install('tabix.tex', prefix.share)
install('TabixReader.java', prefix.bin)
install('libtabix.a', prefix.lib)
install_tree('perl', prefix.perl)
install_tree('python', prefix.python)