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r-genelendatabase: new package (#8938)

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* r-genelendatabase: new package

* r-genelendatabase: git not url

* r-genelendatabase: add runtime deps and fix package type

* r-genelendatabase: dep type
This commit is contained in:
Levi Baber 2018-08-13 22:21:03 -05:00 committed by Adam J. Stewart
parent 7fd6291d59
commit 221a1293aa
1 changed files with 39 additions and 0 deletions
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var/spack/repos/builtin/packages/r-genelendatabase/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RGenelendatabase(RPackage):
"""Length of mRNA transcripts for a number of genomes and gene ID
formats, largely based on UCSC table browser"""
homepage = "https://bioconductor.org/packages/release/data/experiment/html/geneLenDataBase.html"
git = "https://git.bioconductor.org/packages/geneLenDataBase.git"
version('1.16.0', commit='c2a8b2359c6c59388853d6f6d15d71dffb17a198')
depends_on('r@3.5.0:3.5.9', when='@1.16.0:', type=('build', 'run'))
depends_on('r-rtracklayer', type=('build', 'run'))
depends_on('r-genomicfeatures@1.3.15:', type=('build', 'run'))