Add scons support, .zip support, and Cantera package
This commit is contained in:
Adam J. Stewart
149
var/spack/repos/builtin/packages/cantera/package.py
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149
var/spack/repos/builtin/packages/cantera/package.py
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@@ -0,0 +1,149 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
|
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#
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||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
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||||
#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import spack
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import os
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class Cantera(Package):
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"""Cantera is a suite of object-oriented software tools for problems
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involving chemical kinetics, thermodynamics, and/or transport processes."""
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homepage = "http://www.cantera.org/docs/sphinx/html/index.html"
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url = "https://github.com/Cantera/cantera/archive/v2.2.1.tar.gz"
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version('2.2.1', '9d1919bdef39ddec54485fc8a741a3aa')
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variant('lapack', default=True, description='Build with external BLAS/LAPACK libraries')
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variant('threadsafe', default=True, description='Build threadsafe, requires Boost')
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variant('sundials', default=True, description='Build with external Sundials')
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variant('python', default=False, description='Build the Cantera Python module')
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variant('matlab', default=False, description='Build the Cantera Matlab toolbox')
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# Required dependencies
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depends_on('scons')
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# Recommended dependencies
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depends_on('blas', when='+lapack')
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depends_on('lapack', when='+lapack')
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depends_on('boost', when='+threadsafe')
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depends_on('sundials', when='+sundials') # must be compiled with -fPIC
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# Python module dependencies
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extends('python', when='+python')
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depends_on('py-numpy', when='+python')
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depends_on('py-scipy', when='+python')
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depends_on('py-cython', when='+python')
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depends_on('py-3to2', when='+python')
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# TODO: these "when" specs don't actually work
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#depends_on('py-unittest2', when='+python^python@2.6')
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#depends_on('py-unittest2py3k', when='+python^python@3.1')
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# Matlab toolbox dependencies
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# TODO: add Matlab package
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# TODO: allow packages to extend multiple other packages
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#extends('matlab', when='+matlab')
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def install(self, spec, prefix):
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# Required options
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options = [
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'prefix={0}'.format(prefix),
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'CC={0}'.format(os.environ['CC']),
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'CXX={0}'.format(os.environ['CXX']),
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'F77={0}'.format(os.environ['F77']),
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'FORTRAN={0}'.format(os.environ['FC']),
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'cc_flags=-fPIC',
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# Allow Spack environment variables to propagate through to SCons
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'env_vars=all'
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]
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# BLAS/LAPACK support
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if '+lapack' in spec:
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options.extend([
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'blas_lapack_libs=lapack,blas',
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'blas_lapack_dir={0}'.format(spec['lapack'].prefix.lib)
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])
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# Threadsafe build, requires Boost
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if '+threadsafe' in spec:
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options.extend([
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'build_thread_safe=yes',
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'boost_inc_dir={0}'.format(spec['boost'].prefix.include),
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'boost_lib_dir={0}'.format(spec['boost'].prefix.lib),
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'boost_thread_lib=boost_thread-mt'
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])
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else:
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options.append('build_thread_safe=no')
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# Sundials support
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if '+sundials' in spec:
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options.extend([
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'use_sundials=y',
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'sundials_include={0}'.format(spec['sundials'].prefix.include),
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'sundials_libdir={0}'.format(spec['sundials'].prefix.lib),
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'sundials_license={0}'.format(
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join_path(spec['sundials'].prefix, 'LICENSE'))
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])
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else:
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options.append('use_sundials=n')
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# Python module
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if '+python' in spec:
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options.extend([
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'python_package=full',
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'python_cmd={0}'.format(
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join_path(spec['python'].prefix.bin, 'python')),
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'python_array_home={0}'.format(spec['py-numpy'].prefix)
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])
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if spec['python'].satisfies('@3'):
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options.extend([
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'python3_package=y',
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'python3_cmd={0}'.format(
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join_path(spec['python'].prefix.bin, 'python')),
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'python3_array_home={0}'.format(spec['py-numpy'].prefix)
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])
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else:
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options.append('python3_package=n')
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else:
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options.append('python_package=none')
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options.append('python3_package=n')
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# Matlab toolbox
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if '+matlab' in spec:
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options.extend([
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'matlab_toolbox=y',
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'matlab_path={0}'.format(spec['matlab'].prefix)
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])
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else:
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options.append('matlab_toolbox=n')
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scons('build', *options)
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if '+python' in spec:
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# Tests will always fail if Python dependencies aren't built
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#scons('test') # TODO: 3 expected failures, not sure what's wrong
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pass
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scons('install')
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40
var/spack/repos/builtin/packages/py-3to2/package.py
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40
var/spack/repos/builtin/packages/py-3to2/package.py
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@@ -0,0 +1,40 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Py3to2(Package):
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"""lib3to2 is a set of fixers that are intended to backport code written
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for Python version 3.x into Python version 2.x."""
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homepage = "https://pypi.python.org/pypi/3to2"
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url = "https://pypi.python.org/packages/8f/ab/58a363eca982c40e9ee5a7ca439e8ffc5243dde2ae660ba1ffdd4868026b/3to2-1.1.1.zip"
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version('1.1.1', 'cbeed28e350dbdaef86111ace3052824')
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extends('python')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix=%s' % prefix)
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41
var/spack/repos/builtin/packages/py-unittest2/package.py
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41
var/spack/repos/builtin/packages/py-unittest2/package.py
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@@ -0,0 +1,41 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
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#
|
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
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# LLNL-CODE-647188
|
||||
#
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# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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||||
##############################################################################
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from spack import *
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class PyUnittest2(Package):
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"""unittest2 is a backport of the new features added to the unittest
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testing framework in Python 2.7 and onwards."""
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homepage = "https://pypi.python.org/pypi/unittest2"
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url = "https://pypi.python.org/packages/7f/c4/2b0e2d185d9d60772c10350d9853646832609d2f299a8300ab730f199db4/unittest2-1.1.0.tar.gz"
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version('1.1.0', 'f72dae5d44f091df36b6b513305ea000')
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extends('python')
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depends_on('py-setuptools')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix=%s' % prefix)
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42
var/spack/repos/builtin/packages/py-unittest2py3k/package.py
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42
var/spack/repos/builtin/packages/py-unittest2py3k/package.py
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@@ -0,0 +1,42 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
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# Produced at the Lawrence Livermore National Laboratory.
|
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#
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# This file is part of Spack.
|
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
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from spack import *
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class PyUnittest2py3k(Package):
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"""unittest2 is a backport of the new features added to the unittest
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testing framework in Python 2.7 and 3.2. This is a Python 3 compatible
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version of unittest2."""
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homepage = "https://pypi.python.org/pypi/unittest2py3k"
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url = "https://pypi.python.org/packages/4e/3d/d44421e8d828af1399c1509c196db92e2a58f3764b01a0ee928d7025d1ca/unittest2py3k-0.5.1.tar.gz"
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version('0.5.1', '8824ff92044310d9365f90d892bf0f09')
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extends('python')
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depends_on('py-setuptools')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix=%s' % prefix)
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@@ -41,8 +41,6 @@ class Serf(Package):
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depends_on('zlib')
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def install(self, spec, prefix):
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scons = which("scons")
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options = ['PREFIX=%s' % prefix]
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options.append('APR=%s' % spec['apr'].prefix)
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options.append('APU=%s' % spec['apr-util'].prefix)
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@@ -24,16 +24,107 @@
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##############################################################################
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from spack import *
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class Sundials(Package):
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"""SUNDIALS (SUite of Nonlinear and DIfferential/ALgebraic equation Solvers)"""
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"""SUNDIALS (SUite of Nonlinear and DIfferential/ALgebraic equation
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Solvers)"""
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homepage = "http://computation.llnl.gov/casc/sundials/"
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url = "http://computation.llnl.gov/casc/sundials/download/code/sundials-2.5.0.tar.gz"
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url = "http://computation.llnl.gov/projects/sundials-suite-nonlinear-differential-algebraic-equation-solvers/download/sundials-2.6.2.tar.gz"
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version('2.5.0', 'aba8b56eec600de3109cfb967aa3ba0f')
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version('2.6.2', '3deeb0ede9f514184c6bd83ecab77d95')
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depends_on("mpi")
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variant('mpi', default=True, description='Enable MPI support')
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variant('lapack', default=True, description='Build with external BLAS/LAPACK libraries')
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variant('klu', default=True, description='Build with SuiteSparse KLU libraries')
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variant('superlu', default=True, description='Build with SuperLU_MT libraries')
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variant('openmp', default=False, description='Enable OpenMP support')
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variant('pthread', default=True, description='Enable POSIX threads support')
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depends_on('mpi', when='+mpi')
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depends_on('blas', when='+lapack')
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depends_on('lapack', when='+lapack')
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depends_on('suite-sparse', when='+klu')
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depends_on('superlu-mt+openmp', when='+superlu+openmp')
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depends_on('superlu-mt+pthread', when='+superlu+pthread')
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def install(self, spec, prefix):
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configure("--prefix=%s" % prefix)
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make()
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make("install")
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cmake_args = std_cmake_args
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cmake_args.extend([
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'-DBUILD_SHARED_LIBS=ON',
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'-DCMAKE_C_FLAGS=-fPIC'
|
||||
])
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# MPI support
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||||
if '+mpi' in spec:
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cmake_args.extend([
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'-DMPI_ENABLE=ON',
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||||
'-DMPI_MPICC={0}'.format(spec['mpi'].mpicc),
|
||||
'-DMPI_MPIF77={0}'.format(spec['mpi'].mpif77)
|
||||
])
|
||||
else:
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||||
cmake_args.append('-DMPI_ENABLE=OFF')
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|
||||
# Building with LAPACK and BLAS
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if '+lapack' in spec:
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cmake_args.extend([
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||||
'-DLAPACK_ENABLE=ON',
|
||||
'-DLAPACK_LIBRARIES={0};{1}'.format(
|
||||
spec['lapack'].lapack_shared_lib,
|
||||
spec['blas'].blas_shared_lib
|
||||
)
|
||||
])
|
||||
else:
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||||
cmake_args.append('-DLAPACK_ENABLE=OFF')
|
||||
|
||||
# Building with KLU
|
||||
if '+klu' in spec:
|
||||
cmake_args.extend([
|
||||
'-DKLU_ENABLE=ON',
|
||||
'-DKLU_INCLUDE_DIR={0}'.format(
|
||||
spec['suite-sparse'].prefix.include),
|
||||
'-DKLU_LIBRARY_DIR={0}'.format(
|
||||
spec['suite-sparse'].prefix.lib)
|
||||
])
|
||||
else:
|
||||
cmake_args.append('-DKLU_ENABLE=OFF')
|
||||
|
||||
# Building with SuperLU_MT
|
||||
if '+superlu' in spec:
|
||||
cmake_args.extend([
|
||||
'-DSUPERLUMT_ENABLE=ON',
|
||||
'-DSUPERLUMT_INCLUDE_DIR={0}'.format(
|
||||
spec['superlu-mt'].prefix.include),
|
||||
'-DSUPERLUMT_LIBRARY_DIR={0}'.format(
|
||||
spec['superlu-mt'].prefix.lib)
|
||||
])
|
||||
if '+openmp' in spec:
|
||||
cmake_args.append('-DSUPERLUMT_THREAD_TYPE=OpenMP')
|
||||
elif '+pthread' in spec:
|
||||
cmake_args.append('-DSUPERLUMT_THREAD_TYPE=Pthread')
|
||||
else:
|
||||
msg = 'You must choose either +openmp or +pthread when '
|
||||
msg += 'building with SuperLU_MT'
|
||||
raise RuntimeError(msg)
|
||||
else:
|
||||
cmake_args.append('-DSUPERLUMT_ENABLE=OFF')
|
||||
|
||||
# OpenMP support
|
||||
if '+openmp' in spec:
|
||||
cmake_args.append('-DOPENMP_ENABLE=ON')
|
||||
else:
|
||||
cmake_args.append('-DOPENMP_ENABLE=OFF')
|
||||
|
||||
# POSIX threads support
|
||||
if '+pthread' in spec:
|
||||
cmake_args.append('-DPTHREAD_ENABLE=ON')
|
||||
else:
|
||||
cmake_args.append('-DPTHREAD_ENABLE=OFF')
|
||||
|
||||
with working_dir('build', create=True):
|
||||
cmake('..', *cmake_args)
|
||||
|
||||
make()
|
||||
make('install')
|
||||
|
||||
install('LICENSE', prefix)
|
||||
|
||||
135
var/spack/repos/builtin/packages/superlu-mt/package.py
Normal file
135
var/spack/repos/builtin/packages/superlu-mt/package.py
Normal file
@@ -0,0 +1,135 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
import spack
|
||||
import glob
|
||||
import os
|
||||
|
||||
|
||||
class SuperluMt(Package):
|
||||
"""SuperLU is a general purpose library for the direct solution of large,
|
||||
sparse, nonsymmetric systems of linear equations on high performance
|
||||
machines. SuperLU_MT is designed for shared memory parallel machines."""
|
||||
|
||||
homepage = "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/#superlu_mt"
|
||||
url = "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/superlu_mt_3.1.tar.gz"
|
||||
|
||||
version('3.1', '06ac62f1b4b7d17123fffa0d0c315e91')
|
||||
|
||||
variant('blas', default=True, description='Build with external BLAS library')
|
||||
|
||||
# Must choose one or the other
|
||||
variant('openmp', default=False, description='Build with OpenMP support')
|
||||
variant('pthread', default=True, description='Build with POSIX threads support')
|
||||
|
||||
# NOTE: must link with a single-threaded BLAS library
|
||||
depends_on('blas', when='+blas')
|
||||
|
||||
# Cannot be built in parallel
|
||||
parallel = False
|
||||
|
||||
def configure(self, spec):
|
||||
# Validate chosen variants
|
||||
if '+openmp' in spec and '+pthread' in spec:
|
||||
msg = 'You cannot choose both +openmp and +pthread'
|
||||
raise RuntimeError(msg)
|
||||
if '~openmp' in spec and '~pthread' in spec:
|
||||
msg = 'You must choose either +openmp or +pthread'
|
||||
raise RuntimeError(msg)
|
||||
|
||||
# List of configuration options
|
||||
config = []
|
||||
|
||||
# The machine (platform) identifier to append to the library names
|
||||
if '+openmp' in spec:
|
||||
# OpenMP
|
||||
config.extend([
|
||||
'PLAT = _OPENMP',
|
||||
'TMGLIB = libtmglib.a',
|
||||
'MPLIB = {0}'.format(self.compiler.openmp_flag),
|
||||
'CFLAGS = {0}'.format(self.compiler.openmp_flag),
|
||||
'FFLAGS = {0}'.format(self.compiler.openmp_flag)
|
||||
])
|
||||
elif '+pthread' in spec:
|
||||
# POSIX threads
|
||||
config.extend([
|
||||
'PLAT = _PTHREAD',
|
||||
'TMGLIB = libtmglib$(PLAT).a',
|
||||
'MPLIB = -lpthread'
|
||||
])
|
||||
|
||||
# The BLAS library
|
||||
# NOTE: must link with a single-threaded BLAS library
|
||||
if '+blas' in spec:
|
||||
config.extend([
|
||||
'BLASDEF = -DUSE_VENDOR_BLAS',
|
||||
'BLASLIB = -L{0} -lblas'.format(spec['blas'].prefix.lib)
|
||||
])
|
||||
else:
|
||||
config.append('BLASLIB = ../lib/libblas$(PLAT).a')
|
||||
|
||||
# Generic options
|
||||
config.extend([
|
||||
# The name of the libraries to be created/linked to
|
||||
'SUPERLULIB = libsuperlu_mt$(PLAT).a',
|
||||
'MATHLIB = -lm',
|
||||
# The archiver and the flag(s) to use when building archives
|
||||
'ARCH = ar',
|
||||
'ARCHFLAGS = cr',
|
||||
'RANLIB = {0}'.format('ranlib' if which('ranlib') else 'echo'),
|
||||
# Definitions used by CPP
|
||||
'PREDEFS = -D_$(PLAT)',
|
||||
# Compilers and flags
|
||||
'CC = {0}'.format(os.environ['CC']),
|
||||
'CFLAGS += $(PREDEFS) -D_LONGINT',
|
||||
'NOOPTS = -O0',
|
||||
'FORTRAN = {0}'.format(os.environ['FC']),
|
||||
'LOADER = {0}'.format(os.environ['CC']),
|
||||
# C preprocessor defs for compilation
|
||||
'CDEFS = -DAdd_'
|
||||
])
|
||||
|
||||
# Write configuration options to include file
|
||||
with open('make.inc', 'w') as inc:
|
||||
for option in config:
|
||||
inc.write('{0}\n'.format(option))
|
||||
|
||||
def install(self, spec, prefix):
|
||||
# Set up make include file manually
|
||||
self.configure(spec)
|
||||
|
||||
# BLAS needs to be compiled separately if using internal BLAS library
|
||||
if '+blas' not in spec:
|
||||
make('blaslib')
|
||||
|
||||
make()
|
||||
|
||||
# Install manually
|
||||
install_tree('lib', prefix.lib)
|
||||
|
||||
headers = glob.glob(join_path('SRC', '*.h'))
|
||||
mkdir(prefix.include)
|
||||
for h in headers:
|
||||
install(h, prefix.include)
|
||||
Reference in New Issue
Block a user