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mofem: add new releases and minor changes (#9138)

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This commit is contained in:
Lukasz 2018-12-10 13:33:31 +00:00 committed by Massimiliano Culpo
parent 2670823c1e
commit 22446d7303
5 changed files with 79 additions and 48 deletions
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1
var/spack/repos/builtin/packages/moab/package.py
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@ -19,6 +19,7 @@ class Moab(AutotoolsPackage):
homepage = "https://bitbucket.org/fathomteam/moab"
url = "http://ftp.mcs.anl.gov/pub/fathom/moab-5.0.0.tar.gz"
version('5.0.2', '00a6f96f2e6591ab087548839fa3825e')
version('5.0.0', '1840ca02366f4d3237d44af63e239e3b')
version('4.9.2', '540931a604c180bbd3c1bb3ee8c51dd0')
version('4.9.1', '19cc2189fa266181ad9109b18d0b2ab8')

26
var/spack/repos/builtin/packages/mofem-cephas/package.py
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@ -8,31 +8,41 @@
class MofemCephas(CMakePackage):
"""mofem-cephas core library"""
"""MoFEM is finite element core library"""
homepage = "http://mofem.eng.gla.ac.uk"
git = "https://bitbucket.org/likask/mofem-cephas.git"
git = "https://bitbucket.org/likask/mofem-cephas.git"
maintainers = ['likask']
version('develop', branch='develop', submodules=True)
version('0.8.7', tag='v0.8.7', submodules=True)
version('develop', branch='develop')
version('0.8.17', tag='v0.8.17')
version('0.8.16', tag='v0.8.16')
version('0.8.15', tag='v0.8.15')
version('0.8.14', tag='v0.8.14')
version('0.8.13', tag='v0.8.13')
version('0.8.12', tag='v0.8.12')
version('0.8.11', tag='v0.8.11')
version('0.8.10', tag='v0.8.10')
version('0.8.9', tag='v0.8.9')
version('0.8.8', tag='v0.8.8')
version('0.8.7', tag='v0.8.7')
# This option can be only used for development of core lib
variant('copy_user_modules', default=True,
description='Copy user modules directory instead linking to source')
variant('adol-c', default=True, description='Compile with Adol-C')
variant('adol-c', default=True, description='Compile with ADOL-C')
variant('tetgen', default=True, description='Compile with Tetgen')
variant('med', default=True, description='Compile with Med')
variant('slepc', default=False, description='Compile with Slepc')
depends_on("mpi")
depends_on("boost")
depends_on("boost@:1.68")
depends_on("parmetis")
# Fixed version of hdf5, to remove some problems with dependent
# packages, f.e. MED format
depends_on("hdf5@:1.8.19+hl+mpi")
depends_on("petsc@:3.9.2+mumps+mpi")
depends_on("petsc@:3.9.3+mumps+mpi")
depends_on('slepc', when='+slepc')
depends_on("moab")
# Upper bound set to ADOL-C until issues with memory leaks
@ -58,7 +68,7 @@ def cmake_args(self):
'-DBOOST_DIR=%s' % spec['boost'].prefix])
# build tests
options.append('-DMOFEM_BUILD_TETS={0}'.format(
options.append('-DMOFEM_BUILD_TESTS={0}'.format(
'ON' if self.run_tests else 'OFF'))
# variant packages

20
var/spack/repos/builtin/packages/mofem-fracture-module/package.py
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@ -16,12 +16,22 @@ class MofemFractureModule(CMakePackage):
maintainers = ['likask']
version('develop', branch='develop')
version('0.9.50', tag='v0.9.50')
version('0.9.49', tag='v0.9.49')
version('0.9.48', tag='v0.9.48')
version('0.9.47', tag='v0.9.47')
version('0.9.46', tag='v0.9.46')
version('0.9.45', tag='v0.9.45')
version('0.9.44', tag='v0.9.44')
version('0.9.42', tag='v0.9.42')
variant('copy_user_modules', default=True,
description='Copy user modules directory instead linking')
extends('mofem-cephas')
depends_on('mofem-users-modules@0.8.17', when='@0.9.50')
depends_on('mofem-users-modules@0.8.16', when='@0.9.49')
depends_on('mofem-users-modules@0.8.15', when='@0.9.48')
depends_on("mofem-users-modules", type=('build', 'link', 'run'))
# The CMakeLists.txt installed with mofem-cephas package set cmake
@ -40,7 +50,7 @@ def root_cmakelists_dir(self):
:return: directory containing CMakeLists.txt
"""
spec = self.spec
return spec['mofem-cephas'].prefix.users_modules
return spec['mofem-users-modules'].prefix.users_modules
def cmake_args(self):
spec = self.spec
@ -70,15 +80,15 @@ def cmake_args(self):
'-DFM_VERSION_BUILD=%s' % self.spec.version[2]])
# build tests
options.append('-DMOFEM_UM_BUILD_TETS={0}'.format(
options.append('-DMOFEM_UM_BUILD_TESTS={0}'.format(
'ON' if self.run_tests else 'OFF'))
return options
# This function is not needed to run code installed by extension, nor in
# the install process. However for users like to have access to source code
# to play and make with it. Having source code at hand one can compile in
# own build directory it in mofem-cephas view when the extension is
# the install process. However, for users like to have access to source
# code to play, change and make it. Having source code at hand one can
# compile in own build directory it in package view when the extension is
# activated.
@run_after('install')
def copy_source_code(self):

13
var/spack/repos/builtin/packages/mofem-minimal-surface-equation/package.py
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@ -11,11 +11,12 @@ class MofemMinimalSurfaceEquation(CMakePackage):
"""mofem minimal surface equation"""
homepage = "http://mofem.eng.gla.ac.uk"
git = "https://bitbucket.org/likask/mofem_um_minimal_surface_equation.git"
git = "https://bitbucket.org/likask/mofem_um_minimal_surface_equation.git"
maintainers = ['likask']
version('develop', branch='develop')
version('0.3.10', tag='v0.3.10')
version('0.3.9', tag='v0.3.9')
variant('copy_user_modules', default=True,
@ -40,7 +41,7 @@ def root_cmakelists_dir(self):
:return: directory containing CMakeLists.txt
"""
spec = self.spec
return spec['mofem-cephas'].prefix.users_modules
return spec['mofem-users-modules'].prefix.users_modules
def cmake_args(self):
spec = self.spec
@ -58,15 +59,15 @@ def cmake_args(self):
('YES' if '+copy_user_modules' in spec else 'NO')])
# build tests
options.append('-DMOFEM_UM_BUILD_TETS={0}'.format(
options.append('-DMOFEM_UM_BUILD_TESTS={0}'.format(
'ON' if self.run_tests else 'OFF'))
return options
# This function is not needed to run code installed by extension, nor in
# the install process. However for users like to have access to source code
# to play and make with it. Having source code at hand one can compile in
# own build directory it in mofem-cephas view when the extension is
# the install process. However, for users like to have access to source
# code to play, change and make it. Having source code at hand one can
# compile in own build directory it in package view when the extension is
# activated.
@run_after('install')
def copy_source_code(self):

67
var/spack/repos/builtin/packages/mofem-users-modules/package.py
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@ -9,25 +9,23 @@
class MofemUsersModules(CMakePackage):
"""MofemUsersModules creates installation environment for user-provided
modules and extends of mofem-cephas package. The CMakeList.txt file for
user modules is located in mofem-cephas/user_modules prefix.
MofemUsersModules itself does not contain any code (is a dummy with a
single dummy version). It provide sources location of users modules, i.e.
mofem-fracture-module. Those are kept as a stand-alone package (instead
of resources) as they have different versions and developers. One can
install the extension, f.e. spack installs extension spack install
mofem-fracture-module. Next, create a symlink to run the code, f.e. spack
view symlink um_view mofem-cephas, and activate the extension, i.e. spack
activate um_view mofem-minimal-surface-equation. Basic mofem
functionality is available when with spack install mofem-users-modules,
it provides simple examples for calculating elasticity problems,
magnetostatics, saturated and unsaturated flow and a couple more. For
more information how to work with Spack and MoFEM see
modules and extends of mofem-cephas package. For more information how to
work with Spack and MoFEM see
http://mofem.eng.gla.ac.uk/mofem/html/install_spack.html"""
homepage = "http://mofem.eng.gla.ac.uk"
url = "https://bitbucket.org/likask/mofem-joseph/downloads/users_modules_dummy"
version('1.0', '5a8b22c9cdcad7bbad92b1590d55edb1', expand=False)
git = "https://likask@bitbucket.org/mofem/users-modules-cephas.git"
version('develop', branch='develop')
version('0.8.17', commit='60b2341f1635f595d571096dd8c70a7cf7538aeb')
version('0.8.16', commit='f6af51ad7db5b5dbc9d9acc6e753277a857c9f24')
version('0.8.15', commit='4843b2d92ec21ad100a8d637698f56b3a2e14af3')
version('0.8.14', commit='cfaa32133c574a31beaeb36202d033280521ddff')
version('0.8.12', commit='7b2ce5595a95d1b919f50103513c44bb2bc9e6d2')
version('0.8.11', commit='329b06d758137f1ec830f157d383b5ea415963de')
version('0.8.10', commit='ca03a8222b20f9c8ff93a2d6f4c3babbcfde2058')
version('0.8.8', commit='eb40f3c218badcd528ab08ee952835fb2ff07fd3')
version('0.8.7', commit='a83b236f26f258f4d6bafc379ddcb9503088df56')
maintainers = ['likask']
@ -35,18 +33,16 @@ class MofemUsersModules(CMakePackage):
description='Copy user modules directory instead linking')
extends('mofem-cephas')
@property
def root_cmakelists_dir(self):
"""The relative path to the directory containing CMakeLists.txt
This path is relative to the root of the extracted tarball,
not to the ``build_directory``. Defaults to the current directory.
:return: directory containing CMakeLists.txt
"""
spec = self.spec
return spec['mofem-cephas'].prefix.users_modules
depends_on('mofem-cephas@0.8.17', when='@0.8.17')
depends_on('mofem-cephas@0.8.16', when='@0.8.16')
depends_on('mofem-cephas@0.8.15', when='@0.8.15')
depends_on('mofem-cephas@0.8.14', when='@0.8.14')
depends_on('mofem-cephas@0.8.12:0.8.13', when='@0.8.12')
depends_on('mofem-cephas@0.8.11', when='@0.8.11')
depends_on('mofem-cephas@0.8.10', when='@0.8.10')
depends_on('mofem-cephas@0.8.8:0.8.9', when='@0.8.8')
depends_on('mofem-cephas@0.8.7', when='@0.8.7')
depends_on('mofem-cephas@develop', when='@develop')
def cmake_args(self):
spec = self.spec
@ -55,12 +51,25 @@ def cmake_args(self):
# obligatory options
options.extend([
'-DMOFEM_DIR=%s' % spec['mofem-cephas'].prefix.users_module,
'-DWITH_SPACK=YES',
'-DSTAND_ALLONE_USERS_MODULES=%s' %
('YES' if '+copy_user_modules' in spec else 'NO')])
# build tests
options.append('-DMOFEM_UM_BUILD_TETS={0}'.format(
options.append('-DMOFEM_UM_BUILD_TESTS={0}'.format(
'ON' if self.run_tests else 'OFF'))
return options
# This function is not needed to run code installed by extension, nor in
# the install process. However, the source code of users modules is
# necessary to compile other sub-modules. Also, for users like to have
# access to source code to play, change and make it. Having source code at
# hand one can compile in own build directory it in package view when the
# extension is activated.
@run_after('install')
def copy_source_code(self):
source = self.stage.source_path
prefix = self.prefix
install_tree(source, prefix.users_modules)