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added py-dxchange and its dependencies dxfile,edffile,spefile,tifffile (#4534)

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* added py-dxchange and its dependencies dxfile,edffile,spefile,tifffile

* fixed https in homepage of py-dxfile
This commit is contained in:
Stas Sergienko 2017-06-19 16:26:37 -05:00 committed by Adam J. Stewart
parent 9b89272ae0
commit 229886aa8f
5 changed files with 203 additions and 0 deletions
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyDxchange(PythonPackage):
"""DXchange provides an interface with tomoPy and raw tomographic data
collected at different synchrotron facilities."""
homepage = "https://github.com/data-exchange/dxchange"
url = "https://github.com/data-exchange/dxchange/archive/v0.1.2.tar.gz"
version('0.1.2', '36633bb67a1e7d1fb60c2300adbcbab3')
depends_on('py-setuptools', type='build')
depends_on('py-numpy', type='run')
depends_on('py-scipy', type='run')
depends_on('py-h5py', type='run')
depends_on('py-six', type='run')
depends_on('py-netcdf4', type='run')
depends_on('py-spefile', type='run')
depends_on('py-edffile', type='run')
depends_on('py-tifffile', type='run')
depends_on('py-dxfile', type='run')

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var/spack/repos/builtin/packages/py-dxfile/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyDxfile(PythonPackage):
"""Scientific Data Exchange [A1] is a set of guidelines for storing scientific
data and metadata in a Hierarchical Data Format 5 [B6] file."""
homepage = "https://github.com/data-exchange/dxfile"
url = "https://github.com/data-exchange/dxfile/archive/v0.4.tar.gz"
version('0.4', '0402cd38aefdfd5ce92feb43dda18947')
depends_on('py-setuptools', type='build')
depends_on('py-h5py', type='run')

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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyEdffile(PythonPackage):
"""Generic class for Edf files manipulation."""
homepage = "https://github.com/vasole/pymca/blob/master/PyMca5/PyMcaIO/EdfFile.py"
url = "https://github.com/conda-forge/edffile-feedstock.git"
version('5.0.0', git='https://github.com/conda-forge/edffile-feedstock.git',
commit='be5ab4199db9f8209c59e31874934b8536b52301')
depends_on('py-setuptools', type='build')
depends_on('py-numpy', type=('build', 'run'))
build_directory = 'recipe/src'

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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PySpefile(PythonPackage):
"""Reader for SPE files part of pyspec a set of python routines for data
analysis of x-ray scattering experiments"""
homepage = "https://github.com/conda-forge/spefile-feedstock"
url = "https://github.com/conda-forge/spefile-feedstock.git"
version('1.6', git='https://github.com/conda-forge/spefile-feedstock.git',
commit='24394e066da8dee5e7608f556ca0203c9db217f9')
depends_on('py-setuptools', type='build')
depends_on('py-numpy', type='run')
build_directory = 'recipe/src'

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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyTifffile(PythonPackage):
"""Read and write image data from and to TIFF files."""
homepage = "https://github.com/blink1073/tifffile"
url = "https://pypi.io/packages/source/t/tifffile/tifffile-0.12.1.tar.gz"
version('0.12.1', '8a8afa74dd0df7915ac376a6cd7eeffc')
depends_on('py-setuptools', type='build')
depends_on('py-numpy@1.8.2:', type=('build', 'run'))