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Packages/trinotate fix (#9745)

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* trinotate: fix perl location

* trinotate: not where that is

* trinotate: glob

* trinotate: needs perl-dbd-sqlite
This commit is contained in:
Levi Baber
2018-11-13 10:55:59 -06:00
committed by Adam J. Stewart
parent 7938ff9653
commit 25d71e68f2
1 changed files with 7 additions and 0 deletions
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7
var/spack/repos/builtin/packages/trinotate/package.py
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@@ -5,6 +5,7 @@
from spack import * from spack import *
import os import os
import glob
class Trinotate(Package): class Trinotate(Package):
@@ -27,6 +28,12 @@ class Trinotate(Package):
depends_on('perl-dbi', type='run') depends_on('perl-dbi', type='run')
depends_on('perl-dbd-mysql', type='run') depends_on('perl-dbd-mysql', type='run')
depends_on('perl-cgi', type='run') depends_on('perl-cgi', type='run')
depends_on('perl-dbd-sqlite', type='run')
def patch(self):
with working_dir(join_path(self.stage.source_path, 'admin/util')):
perlscripts = glob.glob('*.pl')
filter_file('#!/usr/bin/perl', '#!/usr/bin/env perl', *perlscripts)
def install(self, spec, prefix): def install(self, spec, prefix):
# most of the perl modules have local deps, install the whole tree # most of the perl modules have local deps, install the whole tree