zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

r-rhtslib: fix issue with git commit for v1.28 (#31653)

Browse Source 
There is a problem with the git repo for rhtslib that apparently led to
a bad version entry during the previous round of package updates. A git
checkout on the commit also fails so use branch for most recent version.
This commit is contained in:
Glenn Johnson 2022-08-03 11:22:05 -05:00 committed by GitHub
parent d93c074491
commit 26ec46e834
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 11 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

12
var/spack/repos/builtin/packages/r-rhtslib/package.py
View File

@ -17,7 +17,17 @@ class RRhtslib(RPackage):
bioc = "Rhtslib" bioc = "Rhtslib"
version("1.99.5", commit="a5335e1fea92ea06c33d42c7e290b6d8b4245ad3") # There is a problem with the git repository where the commit for
# version 1.28.0 pulls changes to a file that blocks checking out the
# commit. Use the branch instead.
# error: Your local changes to the following files would be overwritten by
# checkout:
# src/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.1
# Please, commit your changes or stash them before you can switch
# branches.
# Aborting
# version("1.28.0", commit='214fde2218bdbca89f1e12a30d2e081e76915aef')
version("1.28.0", branch="RELEASE_3_15")
version("1.26.0", commit="f5b20e97b283942877529f750b28398782552655") version("1.26.0", commit="f5b20e97b283942877529f750b28398782552655")
version("1.22.0", commit="899b79faa54d42c7c9b9a2bc49972109637d367f") version("1.22.0", commit="899b79faa54d42c7c9b9a2bc49972109637d367f")
version("1.18.1", commit="751a2ebaed43b7991204b27bd6c7870645001d82") version("1.18.1", commit="751a2ebaed43b7991204b27bd6c7870645001d82")