lastz: cast from char to signed char (#15263)
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@ -0,0 +1,70 @@
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--- spack-src/src/sequences.c.org 2020-02-27 16:51:13.380985769 +0900
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+++ spack-src/src/sequences.c 2020-02-27 16:55:38.641465062 +0900
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@@ -5086,14 +5086,14 @@
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// find the next header
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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if ((allowComments) && (ch == '#'))
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{ // comment, skip to end-of-line and go back and try again
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while (ch != '\n')
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{
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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}
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continue;
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}
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@@ -5117,12 +5117,12 @@
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leadingWhite = 0;
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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while ((ch != '\n') && (isspace (ch)))
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{
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leadingWhite++;
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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}
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if (ch == '\n')
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@@ -5137,7 +5137,7 @@
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break; // .. truncate the header)
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*(s++) = ch;
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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}
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*s = 0;
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@@ -5231,7 +5231,7 @@
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debugNamesFile_14;
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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if (ch != '@')
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suicidef ("internal error in find_next_fastq_coi\n"
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@@ -5241,7 +5241,7 @@
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// read the header
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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s = buffer;
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while ((ch != '\n') && (ch != '\r'))
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@@ -5250,7 +5250,7 @@
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break; // .. truncate the header)
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*(s++) = ch;
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ch = seq_getc (_seq);
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- if (ch == EOF) goto failure;
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+ if ((signed char)ch == EOF) goto failure;
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}
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*s = 0;
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@ -14,5 +14,8 @@ class Lastz(MakefilePackage):
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version('1.04.00', sha256='a4c2c7a77430387e96dbc9f5bdc75874334c672be90f5720956c0f211abf9f5a')
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# cast from char to signed char
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patch('cast_signed_char.patch')
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def install(self, spec, prefix):
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make('install', 'LASTZ_INSTALL={0}'.format(prefix.bin))
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