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diamond: add blast support and eigen (#45254)

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Signed-off-by: Shane Nehring <snehring@iastate.edu>
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snehring 2024-08-06 02:30:22 -05:00 committed by GitHub
parent 8de03e2bf5
commit 28171f1b9d
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1 changed files with 28 additions and 0 deletions
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var/spack/repos/builtin/packages/diamond/package.py
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@ -39,10 +39,38 @@ class Diamond(CMakePackage):
depends_on("c", type="build") # generated depends_on("c", type="build") # generated
depends_on("cxx", type="build") # generated depends_on("cxx", type="build") # generated
depends_on("blas", when="+eigen")
depends_on("blast-plus", when="+blast")
depends_on("eigen", when="+eigen")
depends_on("lapack", when="+eigen")
depends_on("zlib-api") depends_on("zlib-api")
depends_on("zstd", when="+zstd")
variant("zstd", default=False, description="Bulid with zstd support", when="@2.1.0:")
variant("blast", default=True, description="Build with blast db support", when="@2.1.0:")
variant("eigen", default=False, description="Build with Eigen support", when="@2.1.0:")
requires("+zstd", when="+blast", msg="blast support requires zstd")
conflicts("target=aarch64:", when="@:0.9.25") conflicts("target=aarch64:", when="@:0.9.25")
# fix error [-Wc++11-narrowing] # fix error [-Wc++11-narrowing]
# Ref: https://github.com/bbuchfink/diamond/commit/155e076d662b0e9268e2b00bef6d33d90aede7ff # Ref: https://github.com/bbuchfink/diamond/commit/155e076d662b0e9268e2b00bef6d33d90aede7ff
patch("fix_narrowing_error.patch", when="@:0.9.25") patch("fix_narrowing_error.patch", when="@:0.9.25")
def cmake_args(self):
args = [
self.define_from_variant("WITH_ZSTD", "zstd"),
self.define_from_variant("EIGEN_BLAS", "eigen"),
]
if self.spec.satisfies("+blast"):
args.extend(
[
self.define(
"BLAST_INCLUDE_DIR",
join_path(self.spec["blast-plus"].prefix.include, "ncbi-tools++"),
),
self.define("BLAST_LIBRARY_DIR", self.spec["blast-plus"].prefix.lib),
]
)
return args