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LBANN: add hydrogen as optional dependency (#8085)

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Add Hydrogen package for fork of Elemental library. Update LBANN
to use either Hydrogen or Elemental.
This commit is contained in:
Brian Van Essen
2018-05-14 11:58:34 -07:00
committed by scheibelp
parent e7a737621f
commit 281e22ed73
2 changed files with 188 additions and 6 deletions
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158
var/spack/repos/builtin/packages/hydrogen/package.py Normal file
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@@ -0,0 +1,158 @@
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import os
import sys
from spack import *
from spack.spec import UnsupportedCompilerError
class Hydrogen(CMakePackage):
"""Hydrogen: Distributed-memory dense and sparse-direct linear algebra
and optimization library. Based on the Elemental library."""
homepage = "http://libelemental.org"
url = "https://github.com/LLNL/Elemental/archive/0.99.tar.gz"
version('develop', git='https://github.com/LLNL/Elemental.git', branch='hydrogen')
version('0.99', 'b678433ab1d498da47acf3dc5e056c23')
variant('shared', default=True,
description='Enables the build of shared libraries')
variant('hybrid', default=True,
description='Make use of OpenMP within MPI packing/unpacking')
variant('openmp_blas', default=False,
description='Use OpenMP for threading in the BLAS library')
variant('quad', default=False,
description='Enable quad precision')
variant('int64', default=False,
description='Use 64bit integers')
variant('int64_blas', default=False,
description='Use 64bit integers for BLAS.')
variant('scalapack', default=False,
description='Build with ScaLAPACK library')
variant('build_type', default='Release',
description='The build type to build',
values=('Debug', 'Release'))
variant('blas', default='openblas', values=('openblas', 'mkl', 'accelerate', 'essl'),
description='Enable the use of OpenBlas/MKL/Accelerate/ESSL')
variant('mpfr', default=False,
description='Support GNU MPFR\'s'
'arbitrary-precision floating-point arithmetic')
variant('cuda', default=False,
description='Builds with support for GPUs via CUDA and cuDNN')
variant('test', default=False,
description='Builds test suite')
# Note that #1712 forces us to enumerate the different blas variants
depends_on('openblas', when='blas=openblas ~openmp_blas ~int64_blas')
depends_on('openblas +ilp64', when='blas=openblas ~openmp_blas +int64_blas')
depends_on('openblas threads=openmp', when='blas=openblas +openmp_blas ~int64_blas')
depends_on('openblas threads=openmp +lip64', when='blas=openblas +openmp_blas +int64_blas')
depends_on('intel-mkl', when="blas=mkl ~openmp_blas ~int64_blas")
depends_on('intel-mkl +ilp64', when="blas=mkl ~openmp_blas +int64_blas")
depends_on('intel-mkl threads=openmp', when='blas=mkl +openmp_blas ~int64_blas')
depends_on('intel-mkl@2017.1 +openmp +ilp64', when='blas=mkl +openmp_blas +int64_blas')
depends_on('veclibfort', when='blas=accelerate')
conflicts('blas=accelerate +openmp_blas')
depends_on('essl -cuda', when='blas=essl -openmp_blas ~int64_blas')
depends_on('essl -cuda +ilp64', when='blas=essl -openmp_blas +int64_blas')
depends_on('essl threads=openmp', when='blas=essl +openmp_blas ~int64_blas')
depends_on('essl threads=openmp +ilp64', when='blas=essl +openmp_blas +int64_blas')
depends_on('netlib-lapack +external-blas', when='blas=essl')
# Note that this forces us to use OpenBLAS until #1712 is fixed
depends_on('lapack', when='blas=openblas ~openmp_blas')
depends_on('mpi', when='~cuda')
depends_on('mpi +cuda', when='+cuda')
depends_on('scalapack', when='+scalapack')
depends_on('gmp', when='+mpfr')
depends_on('mpc', when='+mpfr')
depends_on('mpfr', when='+mpfr')
depends_on('cuda', when='+cuda')
depends_on('cudnn', when='+cuda')
depends_on('cub', when='+cuda')
@property
def libs(self):
shared = True if '+shared' in self.spec else False
return find_libraries(
'libEl', root=self.prefix, shared=shared, recursive=True
)
@when('@:0.84' or '@0.99:')
def cmake_args(self):
spec = self.spec
if '@:0.87.7' in spec and '%intel@:17.0.2' in spec:
raise UnsupportedCompilerError(
"Elemental {0} has a known bug with compiler: {1} {2}".format(
spec.version, spec.compiler.name, spec.compiler.version))
args = [
'-DCMAKE_INSTALL_MESSAGE:STRING=LAZY',
'-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
'-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
'-DCMAKE_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
'-DBUILD_SHARED_LIBS:BOOL=%s' % ('+shared' in spec),
'-DHydrogen_ENABLE_OPENMP:BOOL=%s' % ('+hybrid' in spec),
'-DHydrogen_ENABLE_QUADMATH:BOOL=%s' % ('+quad' in spec),
'-DHydrogen_USE_64BIT_INTS:BOOL=%s' % ('+int64' in spec),
'-DHydrogen_USE_64BIT_BLAS_INTS:BOOL=%s' % ('+int64_blas' in spec),
'-DHydrogen_ENABLE_MPC:BOOL=%s' % ('+mpfr' in spec),
'-DHydrogen_GENERAL_LAPACK_FALLBACK=ON',
'-DHydrogen_ENABLE_CUDA=%s' % ('+cuda' in spec),
'-DHydrogen_ENABLE_TESTING=%s' % ('+test' in spec),
]
# Add support for OS X to find OpenMP
if (self.spec.satisfies('%clang')):
if (sys.platform == 'darwin'):
clang = self.compiler.cc
clang_bin = os.path.dirname(clang)
clang_root = os.path.dirname(clang_bin)
args.extend([
'-DOpenMP_DIR={0}'.format(clang_root)])
if 'blas=openblas' in spec:
args.extend([
'-DHydrogen_USE_OpenBLAS:BOOL=%s' % ('blas=openblas' in spec),
'-DOpenBLAS_DIR:STRING={0}'.format(
spec['hydrogen'].prefix)])
elif 'blas=mkl' in spec:
args.extend([
'-DHydrogen_USE_MKL:BOOL=%s' % ('blas=mkl' in spec)])
elif 'blas=accelerate' in spec:
args.extend(['-DHydrogen_USE_ACCELERATE:BOOL=TRUE'])
elif 'blas=essl' in spec:
args.extend([
'-DHydrogen_USE_ESSL:BOOL=%s' % ('blas=essl' in spec)])
return args

36
var/spack/repos/builtin/packages/lbann/package.py
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@@ -51,13 +51,30 @@ class Lbann(CMakePackage):
description='The build type to build',
values=('Debug', 'Release'))
depends_on('elemental +openmp_blas +shared +int64')
# It seems that there is a need for one statement per version bounds
depends_on('hydrogen +openmp_blas +shared +int64', when='@0.95:')
depends_on('hydrogen +openmp_blas +shared +int64', when='@:0.90')
depends_on('hydrogen +openmp_blas +shared +int64 build_type=Debug',
when=('build_type=Debug' '@0.95:'))
depends_on('hydrogen +openmp_blas +shared +int64 build_type=Debug',
when=('build_type=Debug' '@:0.90'))
depends_on('hydrogen +openmp_blas +shared +int64 +cuda',
when=('+gpu' '@0.95:'))
depends_on('hydrogen +openmp_blas +shared +int64 +cuda',
when=('+gpu' '@:0.90'))
depends_on('hydrogen +openmp_blas +shared +int64 +cuda build_type=Debug',
when=('build_type=Debug' '@0.95:' '+gpu'))
depends_on('hydrogen +openmp_blas +shared +int64 +cuda build_type=Debug',
when=('build_type=Debug' '@:0.90' '+gpu'))
depends_on('elemental +openmp_blas +shared +int64', when=('@0.91:0.94'))
depends_on('elemental +openmp_blas +shared +int64 build_type=Debug',
when=('build_type=Debug'))
when=('build_type=Debug' '@0.91:0.94'))
depends_on('cuda', when='+gpu')
depends_on('cudnn', when='+gpu')
depends_on('cub', when='+gpu')
depends_on('mpi')
depends_on('mpi', when='~gpu')
depends_on('mpi +cuda', when='+gpu')
depends_on('hwloc ~pci ~libxml2')
# LBANN wraps OpenCV calls in OpenMP parallel loops, build without OpenMP
# Additionally disable video related options, they incorrectly link in a
@@ -89,7 +106,7 @@ def common_config_args(self):
# Get any recent versions or non-numeric version
# Note that develop > numeric and non-develop < numeric
@when('@:0.91' or '@0.94:')
@when('@:0.90' or '@0.94:')
def cmake_args(self):
spec = self.spec
args = self.common_config_args
@@ -99,11 +116,18 @@ def cmake_args(self):
('+seq_init' in spec),
'-DLBANN_WITH_TBINF=OFF',
'-DLBANN_WITH_VTUNE=OFF',
'-DElemental_DIR={0}/CMake/elemental'.format(
spec['elemental'].prefix),
'-DLBANN_DATATYPE={0}'.format(spec.variants['dtype'].value),
'-DLBANN_VERBOSE=0'])
if self.spec.satisfies('@:0.90') or self.spec.satisfies('@0.95:'):
args.extend([
'-DHydrogen_DIR={0}/CMake/hydrogen'.format(
spec['hydrogen'].prefix)])
elif self.spec.satisfies('@0.94'):
args.extend([
'-DElemental_DIR={0}/CMake/elemental'.format(
spec['elemental'].prefix)])
# Add support for OpenMP
if (self.spec.satisfies('%clang')):
if (sys.platform == 'darwin'):