From 2a028144bacc9e5bbb0f6b8266b23cc2c04a1646 Mon Sep 17 00:00:00 2001
From: Daniele Colombo <68348680+dacolombo@users.noreply.github.com>
Date: Wed, 21 May 2025 02:05:34 +0200
Subject: [PATCH] cryoef: new package (#50486)

---
 .../builtin/packages/cryoef/package.py        | 30 +++++++++++++++++++
 1 file changed, 30 insertions(+)
 create mode 100644 var/spack/repos/spack_repo/builtin/packages/cryoef/package.py

diff --git a/var/spack/repos/spack_repo/builtin/packages/cryoef/package.py b/var/spack/repos/spack_repo/builtin/packages/cryoef/package.py
new file mode 100644
index 00000000000..26b6e314b3e
--- /dev/null
+++ b/var/spack/repos/spack_repo/builtin/packages/cryoef/package.py
@@ -0,0 +1,30 @@
+# Copyright Spack Project Developers. See COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Cryoef(MakefilePackage):
+    """An open-source software package for robust analysis of the orientation distribution
+    of cryoelectron microscopy data."""
+
+    homepage = "https://www.mrc-lmb.cam.ac.uk/crusso/cryoEF"
+    url = "https://www.mrc-lmb.cam.ac.uk/crusso/cryoEF/cryoEF_v1.1.0.tar.gz"
+
+    version("1.1.0", sha256="655ed8543a0226754bdeb6e0dd4efc0467f15dc4c9c963c44ef7b8d3d0e41b62")
+
+    depends_on("c", type="build")
+    depends_on("cxx", type="build")
+    depends_on("fftw-api@3")
+
+    def patch(self):
+        filter_file(
+            "-lfftw3", f"-lfftw3 {self.spec['fftw-api'].libs.ld_flags} -no-pie", "Makefile"
+        )
+
+    def install(self, spec, prefix):
+        install_tree("TestData", prefix.TestData)
+        install_tree("bin", prefix.bin)
+        install_tree("lib", prefix.lib)
+        install("PlotOD.py", prefix.bin)