cosmomc: New package CosmoMC (#3292)
* cosmomc: New package CosmoMC * cosmomc: Improve version numbering scheme * planck-likelihood: New package * cosmomc: Pacify flake8 * cosmomc: Code cleanup as requested in the review * cosmomc: Various updates suggested during review * cosmomc: Limit compiler versions (as documented in the build instructions) * cosmomc: Correct flake8 error * cosmomc: Use `libs` instead of `lapack_libs` * planck-likelihood: Make makefile output more verbose and readable * planck-likelilhood: Correct order of libraries when calling linker * cosmomc: Clean up check for suitable compiler * planck-likelihood: Use modern mechanism to set environment variables
This commit is contained in:
Erik Schnetter
committed by
Adam J. Stewart
Adam J. Stewart
parent
21e913bac5
commit
2ac343e92e
@@ -0,0 +1,11 @@
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--- a/src/bflike/bflike_smw.f90
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+++ b/src/bflike/bflike_smw.f90
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@@ -1600,6 +1600,8 @@
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ok = .false.
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call fid%init()
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+
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+ unit = 3001
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open(unit = unit,file=trim(filein),status='old',action='read',&
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iostat=istat)
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@@ -0,0 +1,21 @@
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--- a/Makefile
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+++ b/Makefile
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@@ -336,15 +336,15 @@
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$(BDIR)/libclik_f90.$(SO): $(BDIR)/libclik.$(SO) $(addprefix $(ODIR)/,clik_fortran.o clik.f90.o)
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@$(ECHO) "build $(BLUE_COLOR)$(@) $(NO_COLOR)"
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- @$(LD) $(SHARED) $(LDFLAG) $(LAPACK) -L$(BDIR) -lclik $^ -o $@
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+ @$(LD) -o $@ $(addprefix $(ODIR)/,clik_fortran.o clik.f90.o) -L$(BDIR) -lclik $(SHARED) $(LAPACK) $(LDFLAG)
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$(BDIR)/clik_example_C: $(ODIR)/clik_example_c.o $(BDIR)/libclik.$(SO)
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@$(ECHO) "build $(BLUE_COLOR)$(@) $(NO_COLOR)"
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- @$(CC) $(LDFLAG) $(LAPACK) -L$(BDIR) -lclik $< -o $@
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+ @$(CC) -o $@ $(ODIR)/clik_example_c.o -L$(BDIR) -lclik $(LAPACK) $(LDFLAG)
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$(BDIR)/clik_example_f90: $(ODIR)/clik_example_f90.f90.o $(BDIR)/libclik_f90.$(SO)
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@$(ECHO) "build $(BLUE_COLOR)$(@) $(NO_COLOR)"
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- @$(FC) $(LDFLAG) $(LAPACK) -L$(BDIR) -lclik_f90 -lclik $< -o $@
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+ @$(FC) -o $@ $(ODIR)/clik_example_f90.f90.o -L$(BDIR) -lclik_f90 -lclik $(LAPACK) $(LDFLAG)
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$(BDIR)/liblapack_clik.$(SO): |$(BDIR)
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ifndef MKL_LIB_FULLPATH
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148
var/spack/repos/builtin/packages/planck-likelihood/package.py
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148
var/spack/repos/builtin/packages/planck-likelihood/package.py
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@@ -0,0 +1,148 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PlanckLikelihood(Package):
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"""2015 Cosmic Microwave Background (CMB) spectra and likelihood code"""
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homepage = "https://wiki.cosmos.esa.int/planckpla2015/index.php/CMB_spectrum_%26_Likelihood_Code"
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url = "http://irsa.ipac.caltech.edu/data/Planck/release_2/software/COM_Likelihood_Code-v2.0.R2.00.tar.bz2"
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version('2.00', '7a081679ff249dc4f94fb7177e16e818',
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url="http://irsa.ipac.caltech.edu/data/Planck/release_2/software/COM_Likelihood_Code-v2.0.R2.00.tar.bz2")
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variant('lensing-ext', default=False,
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description="Provide lensing-ext data")
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variant('plik-DS', default=False,
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description="Provide plik-DS data")
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variant('plik-HM-ext', default=False,
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description="Provide plik-HM-ext data")
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variant('plik-unbinned', default=False,
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description="Provide plik-unbinned data")
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patch('fortran.patch')
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patch('make.patch')
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resource(
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name='baseline',
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url="http://irsa.ipac.caltech.edu/data/Planck/release_2/software/COM_Likelihood_Data-baseline_R2.00.tar.gz",
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md5='7e784819cea65dbc290ea3619420295a',
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destination='.')
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resource(
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name='lensing-ext',
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url="http://irsa.ipac.caltech.edu/data/Planck/release_2/software/COM_Likelihood_Data-extra-lensing-ext.R2.00.tar.gz",
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md5='091736f73b47a09162050bee27d68399',
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destination='.',
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when='+lensing-ext')
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resource(
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name='plik-DS',
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url="http://irsa.ipac.caltech.edu/data/Planck/release_2/software/COM_Likelihood_Data-extra-plik-DS.R2.00.tar.gz",
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md5='76ac04f989025eecab3825aba7e41f36',
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destination='.',
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when='+plik-DS')
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resource(
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name='plik-HM-ext',
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url="http://irsa.ipac.caltech.edu/data/Planck/release_2/software/COM_Likelihood_Data-extra-plik-HM-ext.R2.00.tar.gz",
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md5='1c3bd8221f973b7bf7e76647451fd6e5',
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destination='.',
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when='+plik-HM-ext')
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resource(
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name='plik-unbinned',
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url="http://irsa.ipac.caltech.edu/data/Planck/release_2/software/COM_Likelihood_Data-extra-plik-unbinned.R2.00.tar.gz",
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md5='c5869aa6b6581b6863d2a6e0ffd3826c',
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destination='.',
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when='+plik-unbinned')
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depends_on('blas')
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depends_on('cfitsio +shared')
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depends_on('lapack')
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# Note: Could also install Python bindings
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parallel = False
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def install(self, spec, prefix):
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# Configure
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# Don't hide build commands
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filter_file("^\t@", "\t", "Makefile")
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makeflags = [
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'PREFIX=%s' % prefix,
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'COLORS=0',
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'CFITSIOPATH=%s' % spec['cfitsio'].prefix,
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'CC=cc',
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'FC=fc',
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'IFORTLIBPATH=',
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'IFORTRUNTIME=-lintlc -limf -lsvml -liomp5 -lifportmt -lifcoremt',
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'GFORTRANLIBPATH=',
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'GFORTRANRUNTIME=-lgfortran -lgomp',
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'LAPACKLIBPATH=',
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'LAPACK=%s' % (spec['lapack'].libs + spec['blas'].libs).ld_flags,
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'COPENMP=%s' % self.compiler.openmp_flag,
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'FOPENMP=%s' % self.compiler.openmp_flag,
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]
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# Build
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make(*makeflags)
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# Install
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make('install', *makeflags)
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fix_darwin_install_name(prefix.lib)
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dirs = ['plc_2.0']
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if '+lensing-ext' in spec:
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dirs.append('lensing_ext')
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if '+plik-DS' in spec:
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dirs.append('plik_DS')
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if '+plik-HM-ext' in spec:
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dirs.append('plik_HM_ext')
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if '+plik-unbinned' in spec:
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dirs.append('plik_unbinned')
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for dir in dirs:
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install_tree(dir, join_path(prefix, 'share', 'clik', dir))
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def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
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prefix = self.prefix
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spack_env.set('CLIK_PATH', prefix)
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spack_env.set('CLIK_DATA', join_path(prefix, 'share', 'clik'))
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spack_env.set('CLIK_PLUGIN', 'rel2015')
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def setup_environment(self, spack_env, run_env):
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prefix = self.prefix
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run_env.set('CLIK_PATH', prefix)
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run_env.set('CLIK_DATA', join_path(prefix, 'share', 'clik'))
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run_env.set('CLIK_PLUGIN', 'rel2015')
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@on_package_attributes(run_tests=True)
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@run_after('install')
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def check_install(self):
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prefix = self.prefix
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clik_example_C = Executable(join_path(prefix.bin, 'clik_example_C'))
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with working_dir('spack-check', create=True):
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clik_example_C(join_path(prefix, 'share', 'clik',
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'plc_2.0', 'hi_l', 'plik',
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'plik_dx11dr2_HM_v18_TT.clik'))
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