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re-merging develop

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This commit is contained in:
Gregory Becker
2016-05-11 15:26:09 -07:00
parent 566fec4015 9cf5404bb7
commit 2e1810e3a7
91 changed files with 3284 additions and 861 deletions
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14
var/spack/repos/builtin/packages/ImageMagick/package.py
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@@ -1,10 +1,11 @@
from spack import *
class Imagemagick(Package):
"""ImageMagick is a image processing library"""
homepage = "http://www.imagemagic.org"
#-------------------------------------------------------------------------
# -------------------------------------------------------------------------
# ImageMagick does not keep around anything but *-10 versions, so
# this URL may change. If you want the bleeding edge, you can
# uncomment it and see if it works but you may need to try to
@@ -17,14 +18,16 @@ class Imagemagick(Package):
# version('6.9.0-6', 'c1bce7396c22995b8bdb56b7797b4a1b',
# url="http://www.imagemagick.org/download/ImageMagick-6.9.0-6.tar.bz2")
#-------------------------------------------------------------------------
# -------------------------------------------------------------------------
# *-10 versions are archived, so these versions should fetch reliably.
# -------------------------------------------------------------------------
version('6.8.9-10', 'aa050bf9785e571c956c111377bbf57c',
url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download")
version(
'6.8.9-10',
'aa050bf9785e571c956c111377bbf57c',
url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download")
depends_on('libtool')
depends_on('jpeg')
depends_on('libtool')
depends_on('libpng')
depends_on('freetype')
depends_on('fontconfig')
@@ -32,6 +35,5 @@ class Imagemagick(Package):
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

15
var/spack/repos/builtin/packages/LuaJIT/package.py Normal file
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@@ -0,0 +1,15 @@
import os
from spack import *
class Luajit(Package):
"""Flast flexible JITed lua"""
homepage = "http://www.luajit.org"
url = "http://luajit.org/download/LuaJIT-2.0.4.tar.gz"
version('2.0.4', 'dd9c38307f2223a504cbfb96e477eca0')
def install(self, spec, prefix):
# Linking with the C++ compiler is a dirty hack to deal with the fact
# that unwinding symbols are not included by libc, this is necessary
# on some platforms for the final link stage to work
make("install", "PREFIX=" + prefix, "TARGET_LD=" + os.environ['CXX'])

7
var/spack/repos/builtin/packages/Mitos/package.py
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@@ -1,19 +1,18 @@
from spack import *
class Mitos(Package):
"""Mitos is a library and a tool for collecting sampled memory
performance data to view with MemAxes"""
homepage = "https://github.com/llnl/Mitos"
url = "https://github.com/llnl/Mitos"
url = "https://github.com/llnl/Mitos"
version('0.9.2',
git='https://github.com/llnl/Mitos.git',
commit='8cb143a2e8c00353ff531a781a9ca0992b0aaa3d')
version('0.9.1',
git='https://github.com/llnl/Mitos.git',
tag='v0.9.1')
version('0.9.1', git='https://github.com/llnl/Mitos.git', tag='v0.9.1')
depends_on('dyninst@8.2.1:')
depends_on('hwloc')

59
var/spack/repos/builtin/packages/R/package.py
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@@ -1,4 +1,14 @@
import functools
import glob
import inspect
import os
import re
from contextlib import closing
import spack
from llnl.util.lang import match_predicate
from spack import *
from spack.util.environment import *
class R(Package):
@@ -9,6 +19,8 @@ class R(Package):
"""
homepage = "https://www.r-project.org"
url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
extendable = True
version('3.2.3', '1ba3dac113efab69e706902810cc2970')
version('3.2.2', '57cef5c2e210a5454da1979562a10e5b')
@@ -38,12 +50,57 @@ class R(Package):
depends_on('tk')
def install(self, spec, prefix):
rlibdir = join_path(prefix, 'rlib')
options = ['--prefix=%s' % prefix,
'--libdir=%s' % rlibdir,
'--enable-R-shlib',
'--enable-BLAS-shlib']
'--enable-BLAS-shlib',
'--enable-R-framework=no']
if '+external-lapack' in spec:
options.extend(['--with-blas', '--with-lapack'])
configure(*options)
make()
make('install')
# ========================================================================
# Set up environment to make install easy for R extensions.
# ========================================================================
@property
def r_lib_dir(self):
return os.path.join('rlib', 'R', 'library')
def setup_dependent_environment(self, spack_env, run_env, extension_spec):
# Set R_LIBS to include the library dir for the
# extension and any other R extensions it depends on.
r_libs_path = []
for d in extension_spec.traverse():
if d.package.extends(self.spec):
r_libs_path.append(os.path.join(d.prefix, self.r_lib_dir))
r_libs_path = ':'.join(r_libs_path)
spack_env.set('R_LIBS', r_libs_path)
# For run time environment set only the path for extension_spec and prepend it to R_LIBS
if extension_spec.package.extends(self.spec):
run_env.prepend_path('R_LIBS', os.path.join(extension_spec.prefix, self.r_lib_dir))
def setup_dependent_package(self, module, ext_spec):
"""
Called before R modules' install() methods.
In most cases, extensions will only need to have one line::
R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' % self.stage.archive_file)
"""
# R extension builds can have a global R executable function
module.R = Executable(join_path(self.spec.prefix.bin, 'R'))
# Add variable for library directry
module.r_lib_dir = os.path.join(ext_spec.prefix, self.r_lib_dir)
# Make the site packages directory for extensions, if it does not exist already.
if ext_spec.package.is_extension:
mkdirp(module.r_lib_dir)

47
var/spack/repos/builtin/packages/antlr/package.py Normal file
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@@ -0,0 +1,47 @@
from spack import *
class Antlr(Package):
homepage = "http://www.antlr.org"
url = "https://github.com/antlr/antlr/tarball/v2.7.7"
# NOTE: This requires that a system Java be available.
# Spack does not yet know how to install Java compilers
# Notes from http://nco.sourceforge.net/#bld
# The first steps to build (i.e., compile, for the most part) NCO from
# source code are to install the pre-requisites: ANTLR version 2.7.7
# (like this one not version 3.x or 4.x!) (required for ncap2)... ANTLR
# binaries from major distributions are pre-built with the source patch
# necessary to allow NCO to link to ANTLR... The ANTLR source file
# CharScanner.hpp must include this line: #include <cstring> or else
# ncap2 will not compile (this tarball is already patched).
version('2.7.7', '914865e853fe8e1e61a9f23d045cb4ab',
# Patched version as described above
url='http://dust.ess.uci.edu/tmp/antlr-2.7.7.tar.gz')
# Unpatched version
# url='http://dust.ess.uci.edu/nco/antlr-2.7.7.tar.gz')
variant('cxx', default=False, description='Enable ANTLR for C++')
variant('java', default=False, description='Enable ANTLR for Java')
variant('python', default=False, description='Enable ANTLR for Python')
variant('csharp', default=False, description='Enable ANTLR for Csharp')
def install(self, spec, prefix):
# Check for future enabling of variants
for v in ('+java', '+python', '+csharp'):
if v in spec:
raise Error('Illegal variant %s; for now, Spack only knows how to build antlr or antlr+cxx')
config_args = [
'--prefix=%s' % prefix,
'--%s-cxx' % ('enable' if '+cxx' in spec else 'disable'),
'--%s-java' % ('enable' if '+java' in spec else 'disable'),
'--%s-python' % ('enable' if '+python' in spec else 'disable'),
'--%s-csharp' % ('enable' if '+csharp' in spec else 'disable')]
# which('autoreconf')('-iv')
configure(*config_args)
make()
make("install")

20
var/spack/repos/builtin/packages/astyle/package.py
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@@ -1,8 +1,11 @@
from spack import *
import os
class Astyle(Package):
"""A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code."""
"""
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI,
Objective-C, C#, and Java Source Code.
"""
homepage = "http://astyle.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/astyle/astyle/astyle%202.04/astyle_2.04_linux.tar.gz"
@@ -11,8 +14,15 @@ class Astyle(Package):
def install(self, spec, prefix):
with working_dir('src'):
# we need to edit the makefile in place to set compiler:
make_file = join_path(self.stage.source_path,
'build', 'gcc', 'Makefile')
filter_file(r'^CXX\s*=.*', 'CXX=%s'.format(spack_cxx), make_file)
make('-f',
join_path(self.stage.source_path,'build','clang','Makefile'),
parallel=False)
make_file,
parallel=False)
mkdirp(self.prefix.bin)
install(join_path(self.stage.source_path, 'src','bin','astyle'), self.prefix.bin)
install(join_path(self.stage.source_path, 'src', 'bin', 'astyle'),
self.prefix.bin)

1
var/spack/repos/builtin/packages/binutils/package.py
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@@ -29,6 +29,7 @@ def install(self, spec, prefix):
configure_args = [
'--prefix=%s' % prefix,
'--disable-dependency-tracking',
'--disable-werror',
'--enable-interwork',
'--enable-multilib',
'--enable-shared',

2
var/spack/repos/builtin/packages/bison/package.py
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@@ -10,6 +10,8 @@ class Bison(Package):
version('3.0.4', 'a586e11cd4aff49c3ff6d3b6a4c9ccf8')
depends_on("m4")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)

90
var/spack/repos/builtin/packages/cbtf-argonavis/package.py
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@@ -1,5 +1,5 @@
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -24,43 +24,83 @@ class CbtfArgonavis(Package):
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-argonavis-1.5.tar.gz"
#version('1.5', '1f7f6512f55409ed2135cfceabe26b82')
#url = "file:/home/jeg/OpenSpeedShop_ROOT/SOURCES/cbtf-argonavis-1.6.tar.gz"
#version('1.6', '0fafa0008478405c2c2319450f174ed4')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-argonavis/cbtf-argonavis')
version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf-argonavis.git')
depends_on("cmake@3.0.2:")
depends_on("cmake@3.0.2")
depends_on("boost@1.50.0:")
depends_on("papi")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("cbtf")
depends_on("cbtf-krell")
depends_on("cuda")
depends_on("cuda@6.0.37")
#depends_on("cuda")
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_VERBOSE_MAKEFILE=ON',
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def install(self, spec, prefix):
# Look for package installation information in the cbtf and cbtf-krell prefixes
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
# FIXME, hard coded for testing purposes, we will alter when the external package feature is available
cuda_prefix_path = "/usr/local/cudatoolkit-6.0"
cupti_prefix_path = "/usr/local/cudatoolkit-6.0/extras/CUPTI"
with working_dir('CUDA'):
with working_dir('build', create=True):
cmake('..',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCUDA_INSTALL_PATH=%s' % cuda_prefix_path,
'-DCUDA_ROOT=%s' % cuda_prefix_path,
'-DCUPTI_ROOT=%s' % cupti_prefix_path,
'-DCUDA_DIR=%s' % cuda_prefix_path,
'-DPAPI_ROOT=%s' % spec['papi'].prefix,
'-DCBTF_PREFIX=%s' % spec['cbtf'].prefix,
*std_cmake_args)
make("clean")
make()
make("install")
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCUDA_DIR=%s' % spec['cuda'].prefix,
'-DCUDA_INSTALL_PATH=%s' % spec['cuda'].prefix,
'-DCUDA_TOOLKIT_ROOT_DIR=%s' % spec['cuda'].prefix,
'-DCUPTI_DIR=%s' % join_path(spec['cuda'].prefix + '/extras/CUPTI'),
'-DCUPTI_ROOT=%s' % join_path(spec['cuda'].prefix + '/extras/CUPTI'),
'-DPAPI_ROOT=%s' % spec['papi'].prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DBoost_DIR=%s' % spec['boost'].prefix,
'-DBOOST_LIBRARYDIR=%s' % spec['boost'].prefix.lib,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DBoost_NO_SYSTEM_PATHS=ON'
])
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")

262
var/spack/repos/builtin/packages/cbtf-krell/package.py
View File

@@ -1,5 +1,5 @@
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -26,21 +26,30 @@ class CbtfKrell(Package):
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# optional mirror access template
#url = "file:/g/g24/jeg/cbtf-krell-1.5.tar.gz"
#version('1.5', 'b13f6df6a93c44149d977773dd776d2f')
#url = "file:/home/jeg/cbtf-krell-1.6.tar.gz"
#version('1.6', 'edeb61cd488f16e7b124f77db9ce762d')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-krell/cbtf-krell')
version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf-krell.git')
# MPI variants
variant('openmpi', default=False, description="Build mpi experiment collector for openmpi MPI when this variant is enabled.")
variant('mpt', default=False, description="Build mpi experiment collector for SGI MPT MPI when this variant is enabled.")
variant('mvapich2', default=False, description="Build mpi experiment collector for mvapich2 MPI when this variant is enabled.")
variant('mvapich', default=False, description="Build mpi experiment collector for mvapich MPI when this variant is enabled.")
variant('mpich2', default=False, description="Build mpi experiment collector for mpich2 MPI when this variant is enabled.")
variant('mpich', default=False, description="Build mpi experiment collector for mpich MPI when this variant is enabled.")
# Dependencies for cbtf-krell
depends_on("cmake@3.0.2")
# For binutils service
depends_on("binutils@2.24+krellpatch")
# collectionTool
depends_on("boost@1.50.0")
depends_on("dyninst@8.2.1")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("boost@1.50.0:")
depends_on("dyninst@8.2.1:")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
@@ -51,66 +60,207 @@ class CbtfKrell(Package):
# MPI Installations
# These have not worked either for build or execution, commenting out for now
#depends_on("openmpi")
#depends_on("mvapich2@2.0")
#depends_on("mpich")
depends_on("openmpi", when='+openmpi')
depends_on("mpich", when='+mpich')
depends_on("mpich2", when='+mpich2')
depends_on("mvapich2", when='+mvapich2')
depends_on("mvapich", when='+mvapich')
depends_on("mpt", when='+mpt')
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_VERBOSE_MAKEFILE=ON',
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def set_mpi_cmakeOptions(self, spec, cmakeOptions):
# Appends to cmakeOptions the options that will enable the appropriate MPI implementations
MPIOptions = []
# openmpi
if '+openmpi' in spec:
MPIOptions.extend([
'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix
])
# mpich
if '+mpich' in spec:
MPIOptions.extend([
'-DMPICH_DIR=%s' % spec['mpich'].prefix
])
# mpich2
if '+mpich2' in spec:
MPIOptions.extend([
'-DMPICH2_DIR=%s' % spec['mpich2'].prefix
])
# mvapich
if '+mvapich' in spec:
MPIOptions.extend([
'-DMVAPICH_DIR=%s' % spec['mvapich'].prefix
])
# mvapich2
if '+mvapich2' in spec:
MPIOptions.extend([
'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix
])
# mpt
if '+mpt' in spec:
MPIOptions.extend([
'-DMPT_DIR=%s' % spec['mpt'].prefix
])
cmakeOptions.extend(MPIOptions)
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix)
# FIXME - hard code path until external package support is available
# Need to change this path and/or add additional paths for MPI experiment support on different platforms
#openmpi_prefix_path = "/opt/openmpi-1.8.2"
#mvapich_prefix_path = "/usr/local/tools/mvapich-gnu"
# Other possibilities, they will need a -DMVAPICH_DIR=, etc clause in the cmake command to be recognized
# mvapich_prefix_path = "<mvapich install path>"
# mvapich2_prefix_path = "<mvapich2 install path>"
# mpich2_prefix_path = "<mpich2 install path>"
# mpich_prefix_path = "<mpich install path>"
# mpt_prefix_path = "<mpt install path>"
# Add in paths for cuda if requested via the cuda variant
# FIXME - hard code path until external package support is available
#if '+cuda' in spec:
# cuda_prefix_path = "/usr/local/cuda-6.0"
# cupti_prefix_path = "/usr/local/cuda-6.0/extras/CUPTI"
#else:
# cuda_prefix_path = ""
# cupti_prefix_path = ""
#'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix,
#'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix,
#'-DMPICH_DIR=%s' % spec['mpich'].prefix,
#'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
#'-DOPENMPI_DIR=%s' % openmpi_prefix_path,
#'-DMVAPICH_DIR=%s' % mvapich_prefix_path,
#'-DLIB_SUFFIX=64',
#'-DCUDA_DIR=%s' % cuda_prefix_path,
#'-DCUPTI_DIR=%s' % cupti_prefix_path,
#cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix)
#'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path
# Build cbtf-krell with cmake
with working_dir('build_cbtf_krell', create=True):
cmake('..',
'-DCMAKE_BUILD_TYPE=Debug',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DBOOST_DIR=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
*std_cmake_args)
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DBOOST_DIR=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix
])
# Add any MPI implementations coming from variant settings
self.set_mpi_cmakeOptions(spec, cmakeOptions)
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")
#if '+cray' in spec:
#if 'cray' in self.spec.architecture:
# if '+runtime' in spec:
# with working_dir('build_cbtf_cray_runtime', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
# -DCMAKE_BUILD_TYPE=Debug \
# -DTARGET_OS="cray" \
# -DRUNTIME_ONLY="true" \
# -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \
# -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \
# -DCBTF_DIR=${CBTF_ROOT} \
# -DBOOST_ROOT=${BOOST_INSTALL_PREFIX} \
# -DXERCESC_DIR=${XERCESC_INSTALL_PREFIX} \
# -DBINUTILS_DIR=${KRELL_ROOT} \
# -DLIBMONITOR_DIR=${KRELL_ROOT_COMPUTE} \
# -DLIBUNWIND_DIR=${KRELL_ROOT_COMPUTE} \
# -DPAPI_DIR=${PAPI_ROOT} \
# -DDYNINST_DIR=${DYNINST_CN_ROOT} \
# -DMRNET_DIR=${MRNET_INSTALL_PREFIX} \
# -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48
# else:
# with working_dir('build_cbtf_cray_frontend', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
# -DCMAKE_BUILD_TYPE=Debug \
# -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \
# -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \
# -DCBTF_DIR=${CBTF_ROOT} \
# -DRUNTIME_TARGET_OS="cray" \
# -DCBTF_KRELL_CN_RUNTIME_DIR=${CBTF_KRELL_CN_RUNTIME_ROOT} \
# -DCBTF_CN_RUNTIME_DIR=${CBTF_CN_RUNTIME_ROOT} \
# -DLIBMONITOR_CN_RUNTIME_DIR=${LIBMONITOR_CN_ROOT} \
# -DLIBUNWIND_CN_RUNTIME_DIR=${LIBUNWIND_CN_ROOT} \
# -DPAPI_CN_RUNTIME_DIR=${PAPI_CN_ROOT} \
# -DXERCESC_CN_RUNTIME_DIR=/${XERCESC_CN_ROOT} \
# -DMRNET_CN_RUNTIME_DIR=${MRNET_CN_ROOT} \
# -DBOOST_CN_RUNTIME_DIR=${BOOST_CN_ROOT} \
# -DDYNINST_CN_RUNTIME_DIR=${DYNINST_CN_ROOT} \
# -DBOOST_ROOT=/${KRELL_ROOT} \
# -DXERCESC_DIR=/${KRELL_ROOT} \
# -DBINUTILS_DIR=/${KRELL_ROOT} \
# -DLIBMONITOR_DIR=${KRELL_ROOT} \
# -DLIBUNWIND_DIR=${KRELL_ROOT} \
# -DPAPI_DIR=${PAPI_ROOT} \
# -DDYNINST_DIR=${KRELL_ROOT} \
# -DMRNET_DIR=${KRELL_ROOT} \
# -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48
# fi
#
# make("clean")
# make()
# make("install")
#
# elif '+mic' in spec:
# if '+runtime' in spec:
# with working_dir('build_cbtf_mic_runtime', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
#
# else:
# with working_dir('build_cbtf_cray_frontend', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake .. \
# fi
#
# else:
# # Build cbtf-krell with cmake
# with working_dir('build_cbtf_krell', create=True):
# cmake('..',
# '-DCMAKE_BUILD_TYPE=Debug',
# '-DCMAKE_INSTALL_PREFIX=%s' % prefix,
# '-DCBTF_DIR=%s' % spec['cbtf'].prefix,
# '-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
# '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
# '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
# '-DPAPI_DIR=%s' % spec['papi'].prefix,
# '-DBOOST_DIR=%s' % spec['boost'].prefix,
# '-DMRNET_DIR=%s' % spec['mrnet'].prefix,
# '-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
# '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
# '-DOPENMPI_DIR=%s' % openmpi_prefix_path,
# '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
# *std_cmake_args)
#
# make("clean")
# make()
# make("install")
#
# fi
#

63
var/spack/repos/builtin/packages/cbtf-lanl/package.py
View File

@@ -1,5 +1,5 @@
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -29,32 +29,65 @@ class CbtfLanl(Package):
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-lanl/cbtf-lanl')
depends_on("cmake@3.0.2")
# Dependencies for cbtf-krell
depends_on("boost@1.50")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
depends_on("cbtf-krell")
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_VERBOSE_MAKEFILE=ON',
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
with working_dir('build', create=True):
cmake('..',
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake')
])
make("clean")
make()
make("install")
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")

88
var/spack/repos/builtin/packages/cbtf/package.py
View File

@@ -1,5 +1,5 @@
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -25,21 +25,44 @@ class Cbtf(Package):
homepage = "http://sourceforge.net/p/cbtf/wiki/Home"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-1.5.tar.gz"
#version('1.6', '1ca88a8834759c4c74452cb97fe7b70a')
#url = "file:/home/jeg/cbtf-1.6.tar.gz"
#version('1.6', 'c1ef4e5aa4e470dffb042abdba0b9987')
# Use when the git repository is available
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf/cbtf')
version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf.git')
depends_on("cmake")
#depends_on("boost@1.42.0:")
depends_on("boost@1.50.0")
depends_on("mrnet@4.1.0+lwthreads")
variant('runtime', default=False, description="build only the runtime libraries and collectors.")
depends_on("cmake@3.0.2")
depends_on("boost@1.50.0:")
depends_on("mrnet@5.0.1:+lwthreads+krellpatch")
depends_on("xerces-c@3.1.1:")
depends_on("libxml2")
# Work around for spack libxml2 package bug, take off python when fixed
depends_on("libxml2+python")
parallel = False
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def install(self, spec, prefix):
with working_dir('build', create=True):
@@ -48,14 +71,45 @@ def install(self, spec, prefix):
# or BOOST_INCLUDEDIR). Useful when specifying BOOST_ROOT.
# Defaults to OFF.
cmake('..',
'--debug-output',
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
if '+runtime' in spec:
# Install message tag include file for use in Intel MIC cbtf-krell build
# FIXME
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake')
])
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
else:
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake')
])
# Add in the standard cmake arguments
cmakeOptions.extend(std_cmake_args)
# Adjust the standard cmake arguments to what we want the build type, etc to be
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
# Invoke cmake
cmake('..', *cmakeOptions)
make("clean")
make()

1
var/spack/repos/builtin/packages/cryptopp/package.py
View File

@@ -13,6 +13,7 @@ class Cryptopp(Package):
version('5.6.3', '3c5b70e2ec98b7a24988734446242d07')
version('5.6.2', '7ed022585698df48e65ce9218f6c6a67')
version('5.6.1', '96cbeba0907562b077e26bcffb483828')
def install(self, spec, prefix):
make()

13
var/spack/repos/builtin/packages/fftw/package.py
View File

@@ -42,7 +42,7 @@ class Fftw(Package):
variant('float', default=True, description='Produces a single precision version of the library')
variant('long_double', default=True, description='Produces a long double precision version of the library')
variant('quad', default=False, description='Produces a quad precision version of the library (works only with GCC and libquadmath)')
variant('openmp', default=False, description="Enable OpenMP support.")
variant('mpi', default=False, description='Activate MPI support')
depends_on('mpi', when='+mpi')
@@ -52,8 +52,15 @@ class Fftw(Package):
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix,
'--enable-shared',
'--enable-threads',
'--enable-openmp']
'--enable-threads']
# Add support for OpenMP
if '+openmp' in spec:
# Note: Apple's Clang does not support OpenMP.
if spec.satisfies('%clang'):
ver = str(self.compiler.version)
if ver.endswith('-apple'):
raise InstallError("Apple's clang does not support OpenMP")
options.append('--enable-openmp')
if not self.compiler.f77 or not self.compiler.fc:
options.append("--disable-fortran")
if '+mpi' in spec:

1
var/spack/repos/builtin/packages/gdb/package.py
View File

@@ -34,6 +34,7 @@ class Gdb(Package):
homepage = "https://www.gnu.org/software/gdb"
url = "http://ftp.gnu.org/gnu/gdb/gdb-7.10.tar.gz"
version('7.11', 'f585059252836a981ea5db9a5f8ce97f')
version('7.10.1', 'b93a2721393e5fa226375b42d567d90b')
version('7.10', 'fa6827ad0fd2be1daa418abb11a54d86')
version('7.9.1', 'f3b97de919a9dba84490b2e076ec4cb0')

3
var/spack/repos/builtin/packages/glib/package.py
View File

@@ -1,4 +1,5 @@
from spack import *
import sys
class Glib(Package):
"""The GLib package contains a low-level libraries useful for
@@ -12,6 +13,8 @@ class Glib(Package):
depends_on("libffi")
depends_on("zlib")
depends_on("pkg-config")
depends_on('gettext', sys.platform=='darwin')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)

5
var/spack/repos/builtin/packages/gmsh/package.py
View File

@@ -63,6 +63,11 @@ def install(self, spec, prefix):
build_directory = join_path(self.stage.path, 'spack-build')
source_directory = self.stage.source_path
options.append('-DCMAKE_INSTALL_NAME_DIR:PATH=%s/lib' % prefix)
# Prevent GMsh from using its own strange directory structure on OSX
options.append('-DENABLE_OS_SPECIFIC_INSTALL=OFF')
if '+shared' in spec:
options.extend(['-DENABLE_BUILD_SHARED:BOOL=ON',
'-DENABLE_BUILD_DYNAMIC:BOOL=ON']) # Builds dynamic executable and installs shared library

61
var/spack/repos/builtin/packages/hdf5/package.py
View File

@@ -24,6 +24,7 @@
##############################################################################
from spack import *
import shutil
class Hdf5(Package):
@@ -114,14 +115,16 @@ def install(self, spec, prefix):
# this is not actually a problem.
extra_args.extend([
"--enable-parallel",
"CC=%s" % spec['mpi'].prefix.bin + "/mpicc",
"CC=%s" % join_path(spec['mpi'].prefix.bin, "mpicc"),
])
if '+cxx' in spec:
extra_args.append("CXX=%s" % spec['mpi'].prefix.bin + "/mpic++")
extra_args.append("CXX=%s" % join_path(spec['mpi'].prefix.bin,
"mpic++"))
if '+fortran' in spec:
extra_args.append("FC=%s" % spec['mpi'].prefix.bin + "/mpifort")
extra_args.append("FC=%s" % join_path(spec['mpi'].prefix.bin,
"mpifort"))
if '+szip' in spec:
extra_args.append("--with-szlib=%s" % spec['szip'].prefix)
@@ -138,6 +141,58 @@ def install(self, spec, prefix):
*extra_args)
make()
make("install")
self.check_install(spec)
def check_install(self, spec):
"Build and run a small program to test the installed HDF5 library"
print "Checking HDF5 installation..."
checkdir = "spack-check"
with working_dir(checkdir, create=True):
source = r"""
#include <hdf5.h>
#include <assert.h>
#include <stdio.h>
int main(int argc, char **argv) {
unsigned majnum, minnum, relnum;
herr_t herr = H5get_libversion(&majnum, &minnum, &relnum);
assert(!herr);
printf("HDF5 version %d.%d.%d %u.%u.%u\n", H5_VERS_MAJOR, H5_VERS_MINOR,
H5_VERS_RELEASE, majnum, minnum, relnum);
return 0;
}
"""
expected = """\
HDF5 version {version} {version}
""".format(version=str(spec.version))
with open("check.c", 'w') as f:
f.write(source)
if '+mpi' in spec:
cc = which(join_path(spec['mpi'].prefix.bin, "mpicc"))
else:
cc = which('cc')
# TODO: Automate these path and library settings
cc('-c', "-I%s" % join_path(spec.prefix, "include"), "check.c")
cc('-o', "check", "check.o",
"-L%s" % join_path(spec.prefix, "lib"), "-lhdf5",
"-lz")
try:
check = Executable('./check')
output = check(return_output=True)
except:
output = ""
success = output == expected
if not success:
print "Produced output does not match expected output."
print "Expected output:"
print '-'*80
print expected
print '-'*80
print "Produced output:"
print '-'*80
print output
print '-'*80
raise RuntimeError("HDF5 install check failed")
shutil.rmtree(checkdir)
def url_for_version(self, version):
v = str(version)

1
var/spack/repos/builtin/packages/hwloc/package.py
View File

@@ -17,6 +17,7 @@ class Hwloc(Package):
list_url = "http://www.open-mpi.org/software/hwloc/"
list_depth = 3
version('1.11.3', 'c1d36a9de6028eac1d18ea4782ef958f')
version('1.11.2', 'e4ca55c2a5c5656da4a4e37c8fc51b23')
version('1.11.1', 'feb4e416a1b25963ed565d8b42252fdc')
version('1.9', '1f9f9155682fe8946a97c08896109508')

11
var/spack/repos/builtin/packages/jpeg/package.py
View File

@@ -1,14 +1,19 @@
from spack import *
class Jpeg(Package):
"""jpeg library"""
homepage = "http://www.ijg.org"
url = "http://www.ijg.org/files/jpegsrc.v9a.tar.gz"
"""libjpeg is a widely used free library with functions for handling the
JPEG image data format. It implements a JPEG codec (encoding and decoding)
alongside various utilities for handling JPEG data."""
homepage = "http://www.ijg.org"
url = "http://www.ijg.org/files/jpegsrc.v9b.tar.gz"
version('9b', '6a9996ce116ec5c52b4870dbcd6d3ddb')
version('9a', '3353992aecaee1805ef4109aadd433e7')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("test")
make("install")

32
var/spack/repos/builtin/packages/kripke/package.py Normal file
View File

@@ -0,0 +1,32 @@
from spack import *
class Kripke(Package):
"""Kripke is a simple, scalable, 3D Sn deterministic particle
transport proxy/mini app.
"""
homepage = "https://codesign.llnl.gov/kripke.php"
url = "https://codesign.llnl.gov/downloads/kripke-openmp-1.1.tar.gz"
version('1.1', '7fe6f2b26ed983a6ce5495ab701f85bf')
variant('mpi', default=True, description='Build with MPI.')
variant('openmp', default=True, description='Build with OpenMP enabled.')
depends_on('mpi', when="+mpi")
def install(self, spec, prefix):
with working_dir('build', create=True):
def enabled(variant):
return (1 if variant in spec else 0)
cmake('-DCMAKE_INSTALL_PREFIX:PATH=.',
'-DENABLE_OPENMP=%d' % enabled('+openmp'),
'-DENABLE_MPI=%d' % enabled('+mpi'),
'..',
*std_cmake_args)
make()
# Kripke does not provide install target, so we have to copy
# things into place.
mkdirp(prefix.bin)
install('kripke', prefix.bin)

17
var/spack/repos/builtin/packages/libtermkey/package.py Normal file
View File

@@ -0,0 +1,17 @@
from spack import *
class Libtermkey(Package):
"""Easy keyboard entry processing for terminal programs"""
homepage = "http://www.leonerd.org.uk/code/libtermkey/"
url = "http://www.leonerd.org.uk/code/libtermkey/libtermkey-0.18.tar.gz"
version('0.18' , '3be2e3e5a851a49cc5e8567ac108b520')
version('0.17' , '20edb99e0d95ec1690fe90e6a555ae6d')
version('0.16' , '7a24b675aaeb142d30db28e7554987d4')
version('0.15b', '27689756e6c86c56ae454f2ac259bc3d')
version('0.14' , 'e08ce30f440f9715c459060e0e048978')
def install(self, spec, prefix):
make()
make("install", "PREFIX=" + prefix)

21
var/spack/repos/builtin/packages/libuv/package.py Normal file
View File

@@ -0,0 +1,21 @@
from spack import *
class Libuv(Package):
"""Multi-platform library with a focus on asynchronous IO"""
homepage = "http://libuv.org"
url = "https://github.com/libuv/libuv/archive/v1.9.0.tar.gz"
version('1.9.0', '14737f9c76123a19a290dabb7d1cd04c')
depends_on('automake')
depends_on('autoconf')
depends_on('libtool')
def install(self, spec, prefix):
bash = which("bash")
bash('autogen.sh')
configure('--prefix=%s' % prefix)
make()
make("check")
make("install")

12
var/spack/repos/builtin/packages/libvterm/package.py Normal file
View File

@@ -0,0 +1,12 @@
from spack import *
class Libvterm(Package):
"""An abstract library implementation of a terminal emulator"""
homepage = "http://www.leonerd.org.uk/code/libvterm/"
url = "http://www.leonerd.org.uk/code/libvterm/libvterm-0+bzr681.tar.gz"
version('681', '7a4325a7350b7092245c04e8ee185ac3')
def install(self, spec, prefix):
make()
make("install", "PREFIX=" + prefix)

1
var/spack/repos/builtin/packages/libxcb/package.py
View File

@@ -13,6 +13,7 @@ class Libxcb(Package):
version('1.11.1', '118623c15a96b08622603a71d8789bf3')
depends_on("python")
depends_on("xcb-proto")
depends_on("pkg-config")
# depends_on('pthread') # Ubuntu: apt-get install libpthread-stubs0-dev
# depends_on('xau') # Ubuntu: apt-get install libxau-dev

4
var/spack/repos/builtin/packages/mpich/package.py
View File

@@ -43,6 +43,8 @@ class Mpich(Package):
version('3.0.4', '9c5d5d4fe1e17dd12153f40bc5b6dbc0')
variant('verbs', default=False, description='Build support for OpenFabrics verbs.')
variant('pmi', default=True, description='Build with PMI support')
variant('hydra', default=True, description='Build the hydra process manager')
provides('mpi@:3.0', when='@3:')
provides('mpi@:1.3', when='@1:')
@@ -62,6 +64,8 @@ def setup_dependent_package(self, module, dep_spec):
def install(self, spec, prefix):
config_args = ["--prefix=" + prefix,
"--with-pmi=" + ("yes" if '+pmi' in spec else 'no'),
"--with-pm=" + ('hydra' if '+hydra' in spec else 'no'),
"--enable-shared"]
# Variants

14
var/spack/repos/builtin/packages/msgpack-c/package.py Normal file
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@@ -0,0 +1,14 @@
from spack import *
class MsgpackC(Package):
"""A small, fast binary interchange format convertible to/from JSON"""
homepage = "http://www.msgpack.org"
url = "https://github.com/msgpack/msgpack-c/archive/cpp-1.4.1.tar.gz"
version('1.4.1', 'e2fd3a7419b9bc49e5017fdbefab87e0')
def install(self, spec, prefix):
cmake('.', *std_cmake_args)
make()
make("install")

23
var/spack/repos/builtin/packages/nccmp/package.py Normal file
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@@ -0,0 +1,23 @@
from spack import *
class Nccmp(Package):
"""Compare NetCDF Files"""
homepage = "http://nccmp.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/nccmp/nccmp-1.8.2.0.tar.gz"
version('1.8.2.0', '81e6286d4413825aec4327e61a28a580')
depends_on('netcdf')
def install(self, spec, prefix):
# Configure says: F90 and F90FLAGS are replaced by FC and
# FCFLAGS respectively in this configure, please unset
# F90/F90FLAGS and set FC/FCFLAGS instead and rerun configure
# again.
env.pop('F90', None)
env.pop('F90FLAGS', None)
configure('--prefix=%s' % prefix)
make()
make("check")
make("install")

30
var/spack/repos/builtin/packages/nco/package.py Normal file
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@@ -0,0 +1,30 @@
from spack import *
import os
class Nco(Package):
"""The NCO toolkit manipulates and analyzes data stored in
netCDF-accessible formats"""
homepage = "https://sourceforge.net/projects/nco"
url = "https://github.com/nco/nco/archive/4.5.5.tar.gz"
version('4.5.5', '9f1f1cb149ad6407c5a03c20122223ce')
# See "Compilation Requirements" at:
# http://nco.sourceforge.net/#bld
depends_on('netcdf')
depends_on('antlr@2.7.7+cxx') # (required for ncap2)
depends_on('gsl') # (desirable for ncap2)
depends_on('udunits2') # (allows dimensional unit transformations)
# depends_on('opendap') # (enables network transparency),
def install(self, spec, prefix):
opts = [
'--prefix=%s' % prefix,
'--disable-openmp', # TODO: Make this a variant
'--disable-dap', # TODO: Make this a variant
'--disable-esmf']
configure(*opts)
make()
make("install")

105
var/spack/repos/builtin/packages/openblas/package.py
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@@ -1,20 +1,21 @@
from spack import *
import sys
from spack.package_test import *
import os
import shutil
class Openblas(Package):
"""OpenBLAS: An optimized BLAS library"""
homepage = "http://www.openblas.net"
url = "http://github.com/xianyi/OpenBLAS/archive/v0.2.15.tar.gz"
version('0.2.18', '805e7f660877d588ea7e3792cda2ee65')
version('0.2.17', '664a12807f2a2a7cda4781e3ab2ae0e1')
version('0.2.16', 'fef46ab92463bdbb1479dcec594ef6dc')
version('0.2.15', 'b1190f3d3471685f17cfd1ec1d252ac9')
variant('shared', default=True, description="Build shared libraries as well as static libs.")
variant('openmp', default=True, description="Enable OpenMP support.")
variant('fpic', default=True, description="Build position independent code")
variant('shared', default=True, description="Build shared libraries as well as static libs.") # NOQA: ignore=E501
variant('openmp', default=False, description="Enable OpenMP support.")
variant('fpic', default=True, description="Build position independent code") # NOQA: ignore=E501
# virtual dependency
provides('blas')
@@ -45,8 +46,13 @@ def install(self, spec, prefix):
make_defs += ['BUILD_LAPACK_DEPRECATED=1']
# Add support for OpenMP
# Note: Make sure your compiler supports OpenMP
if '+openmp' in spec:
# Openblas (as of 0.2.18) hardcoded that OpenMP cannot
# be used with any (!) compiler named clang, bummer.
if spec.satisfies('%clang'):
raise InstallError('OpenBLAS does not support ',
'OpenMP with clang!')
make_defs += ['USE_OPENMP=1']
make_args = make_defs + make_targets
@@ -62,84 +68,49 @@ def install(self, spec, prefix):
symlink('libopenblas.a', 'blas.a')
symlink('libopenblas.a', 'libblas.a')
if '+shared' in spec:
symlink('libopenblas.%s' % dso_suffix, 'libblas.%s' % dso_suffix)
symlink('libopenblas.%s' % dso_suffix,
'libblas.%s' % dso_suffix)
# Lapack virtual package should provide liblapack.a
with working_dir(prefix.lib):
symlink('libopenblas.a', 'liblapack.a')
if '+shared' in spec:
symlink('libopenblas.%s' % dso_suffix, 'liblapack.%s' % dso_suffix)
symlink('libopenblas.%s' % dso_suffix,
'liblapack.%s' % dso_suffix)
# Openblas may pass its own test but still fail to compile Lapack
# symbols. To make sure we get working Blas and Lapack, do a small test.
# symbols. To make sure we get working Blas and Lapack, do a small
# test.
self.check_install(spec)
def setup_dependent_package(self, module, dspec):
# This is WIP for a prototype interface for virtual packages.
# We can update this as more builds start depending on BLAS/LAPACK.
libdir = find_library_path('libopenblas.a', self.prefix.lib64, self.prefix.lib)
libdir = find_library_path('libopenblas.a',
self.prefix.lib64,
self.prefix.lib)
self.spec.blas_static_lib = join_path(libdir, 'libopenblas.a')
self.spec.lapack_static_lib = self.spec.blas_static_lib
if '+shared' in self.spec:
self.spec.blas_shared_lib = join_path(libdir, 'libopenblas.%s' % dso_suffix)
self.spec.blas_shared_lib = join_path(libdir, 'libopenblas.%s' %
dso_suffix)
self.spec.lapack_shared_lib = self.spec.blas_shared_lib
def check_install(self, spec):
"Build and run a small program to test that we have Lapack symbols"
print "Checking Openblas installation..."
checkdir = "spack-check"
with working_dir(checkdir, create=True):
source = r"""
#include <cblas.h>
#include <stdio.h>
int main(void) {
int i=0;
double A[6] = {1.0, 2.0, 1.0, -3.0, 4.0, -1.0};
double B[6] = {1.0, 2.0, 1.0, -3.0, 4.0, -1.0};
double C[9] = {.5, .5, .5, .5, .5, .5, .5, .5, .5};
cblas_dgemm(CblasColMajor, CblasNoTrans, CblasTrans,
3, 3, 2, 1, A, 3, B, 3, 2, C, 3);
for (i = 0; i < 9; i++)
printf("%f\n", C[i]);
return 0;
}
"""
expected = """\
11.000000
-9.000000
5.000000
-9.000000
21.000000
-1.000000
5.000000
-1.000000
3.000000
"""
with open("check.c", 'w') as f:
f.write(source)
cc = which('cc')
# TODO: Automate these path and library settings
cc('-c', "-I%s" % join_path(spec.prefix, "include"), "check.c")
cc('-o', "check", "check.o",
"-L%s" % join_path(spec.prefix, "lib"), "-llapack", "-lblas", "-lpthread")
try:
check = Executable('./check')
output = check(return_output=True)
except:
output = ""
success = output == expected
if not success:
print "Produced output does not match expected output."
print "Expected output:"
print '-'*80
print expected
print '-'*80
print "Produced output:"
print '-'*80
print output
print '-'*80
raise RuntimeError("Openblas install check failed")
shutil.rmtree(checkdir)
source_file = join_path(os.path.dirname(self.module.__file__),
'test_cblas_dgemm.c')
blessed_file = join_path(os.path.dirname(self.module.__file__),
'test_cblas_dgemm.output')
include_flags = ["-I%s" % join_path(spec.prefix, "include")]
link_flags = ["-L%s" % join_path(spec.prefix, "lib"),
"-llapack",
"-lblas",
"-lpthread"]
if '+openmp' in spec:
link_flags.extend([self.compiler.openmp_flag])
output = compile_c_and_execute(source_file, include_flags, link_flags)
compare_output_file(output, blessed_file)

56
var/spack/repos/builtin/packages/openblas/test_cblas_dgemm.c
View File

@@ -1,13 +1,49 @@
#include <cblas.h>
#include <stdio.h>
int main(void) {
int i=0;
double A[6] = {1.0, 2.0, 1.0, -3.0, 4.0, -1.0};
double B[6] = {1.0, 2.0, 1.0, -3.0, 4.0, -1.0};
double C[9] = {.5, .5, .5, .5, .5, .5, .5, .5, .5};
cblas_dgemm(CblasColMajor, CblasNoTrans, CblasTrans,
3, 3, 2, 1, A, 3, B, 3, 2, C, 3);
for (i = 0; i < 9; i++)
printf("%f\n", C[i]);
return 0;
double m[] = {
3, 1, 3,
1, 5, 9,
2, 6, 5
};
double x[] = {
-1, 3, -3
};
#ifdef __cplusplus
extern "C" {
#endif
void dgesv_(int *n, int *nrhs, double *a, int *lda,
int *ipivot, double *b, int *ldb, int *info);
#ifdef __cplusplus
}
#endif
int main(void) {
int i;
// blas:
double A[6] = {1.0, 2.0, 1.0, -3.0, 4.0, -1.0};
double B[6] = {1.0, 2.0, 1.0, -3.0, 4.0, -1.0};
double C[9] = {.5, .5, .5, .5, .5, .5, .5, .5, .5};
cblas_dgemm(CblasColMajor, CblasNoTrans, CblasTrans,
3, 3, 2, 1, A, 3, B, 3, 2, C, 3);
for (i = 0; i < 9; i++)
printf("%f\n", C[i]);
// lapack:
int ipiv[3];
int j;
int info;
int n = 1;
int nrhs = 1;
int lda = 3;
int ldb = 3;
dgesv_(&n,&nrhs, &m[0], &lda, ipiv, &x[0], &ldb, &info);
for (i=0; i<3; ++i)
printf("%5.1f\n", x[i]);
return 0;
}

3
var/spack/repos/builtin/packages/openblas/test_cblas_dgemm.output
View File

@@ -7,3 +7,6 @@
5.000000
-1.000000
3.000000
-0.3
3.0
-3.0

59
var/spack/repos/builtin/packages/openmpi/package.py
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@@ -1,6 +1,8 @@
from spack import *
import os
from spack import *
class Openmpi(Package):
"""Open MPI is a project combining technologies and resources from
several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI)
@@ -26,16 +28,26 @@ class Openmpi(Package):
patch('configure.patch', when="@1.10.0:1.10.1")
variant('psm', default=False, description='Build support for the PSM library.')
variant('psm2', default=False, description='Build support for the Intel PSM2 library.')
variant('pmi', default=False, description='Build support for PMI-based launchers')
variant('verbs', default=False, description='Build support for OpenFabrics verbs.')
variant('mxm', default=False, description='Build Mellanox Messaging support')
# TODO : variant support for other schedulers is missing
variant('thread_multiple', default=False, description='Enable MPI_THREAD_MULTIPLE support')
# TODO : variant support for alps, loadleveler is missing
variant('tm', default=False, description='Build TM (Torque, PBSPro, and compatible) support')
variant('slurm', default=False, description='Build SLURM scheduler component')
variant('sqlite3', default=False, description='Build sqlite3 support')
# TODO : support for CUDA is missing
provides('mpi@:2.2', when='@1.6.5')
provides('mpi@:3.0', when='@1.7.5:')
depends_on('hwloc')
depends_on('sqlite', when='+sqlite3')
def url_for_version(self, version):
return "http://www.open-mpi.org/software/ompi/v%s/downloads/openmpi-%s.tar.bz2" % (version.up_to(2), version)
@@ -53,27 +65,35 @@ def setup_dependent_package(self, module, dep_spec):
self.spec.mpifc = join_path(self.prefix.bin, 'mpif90')
self.spec.mpif77 = join_path(self.prefix.bin, 'mpif77')
@property
def verbs(self):
# Up through version 1.6, this option was previously named --with-openib
if self.spec.satisfies('@:1.6'):
return 'openib'
# In version 1.7, it was renamed to be --with-verbs
elif self.spec.satisfies('@1.7:'):
return 'verbs'
def install(self, spec, prefix):
config_args = ["--prefix=%s" % prefix,
"--with-hwloc=%s" % spec['hwloc'].prefix,
"--enable-shared",
"--enable-static"]
# Variants
if '+tm' in spec:
config_args.append("--with-tm") # necessary for Torque support
if '+psm' in spec:
config_args.append("--with-psm")
if '+verbs' in spec:
# Up through version 1.6, this option was previously named --with-openib
if spec.satisfies('@:1.6'):
config_args.append("--with-openib")
# In version 1.7, it was renamed to be --with-verbs
elif spec.satisfies('@1.7:'):
config_args.append("--with-verbs")
# Variant based arguments
config_args.extend([
# Schedulers
'--with-tm' if '+tm' in spec else '--without-tm',
'--with-slurm' if '+slurm' in spec else '--without-slurm',
# Fabrics
'--with-psm' if '+psm' in spec else '--without-psm',
'--with-psm2' if '+psm2' in spec else '--without-psm2',
('--with-%s' % self.verbs) if '+verbs' in spec else ('--without-%s' % self.verbs),
'--with-mxm' if '+mxm' in spec else '--without-mxm',
# Other options
'--enable-mpi-thread-multiple' if '+thread_multiple' in spec else '--disable-mpi-thread-multiple',
'--with-pmi' if '+pmi' in spec else '--without-pmi',
'--with-sqlite3' if '+sqlite3' in spec else '--without-sqlite3'
])
# TODO: use variants for this, e.g. +lanl, +llnl, etc.
# use this for LANL builds, but for LLNL builds, we need:
@@ -81,9 +101,6 @@ def install(self, spec, prefix):
if self.version == ver("1.6.5") and '+lanl' in spec:
config_args.append("--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas")
# TODO: Spack should make it so that you can't actually find
# these compilers if they're "disabled" for the current
# compiler configuration.
if not self.compiler.f77 and not self.compiler.fc:
config_args.append("--enable-mpi-fortran=no")

300
var/spack/repos/builtin/packages/openspeedshop/package.py
View File

@@ -1,5 +1,5 @@
################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
# Copyright (c) 2015-2016 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
@@ -28,20 +28,15 @@ class Openspeedshop(Package):
as open source code primarily under LGPL.
"""
homepage = "http://www.openspeedshop.org"
url = "http://sourceforge.net/projects/openss/files/openss/openspeedshop-2.2/openspeedshop-2.2.tar.gz/download"
url = "https://github.com/OpenSpeedShop"
version('2.2', '16cb051179c2038de4e8a845edf1d573')
# Use when the git repository is available
version('2.2', branch='master', git='https://github.com/OpenSpeedShop/openspeedshop.git')
#homepage = "http://www.openspeedshop.org"
#url = "http://sourceforge.net/projects/openss/files/openss/openspeedshop-2.1/openspeedshop-2.1.tar.gz/download"
#version('2.1', 'bdaa57c1a0db9d0c3e0303fd8496c507')
# optional mirror template
#url = "file:/g/g24/jeg/openspeedshop-2.1.tar.gz"
#version('2.1', '64ee17166519838c7b94a1adc138e94f')
# Optional mirror template
#url = "file:/home/jeg/OpenSpeedShop_ROOT/SOURCES/openspeedshop-2.2.tar.gz"
#version('2.2', '643337740dc6c2faca60f42d3620b0e1')
parallel = False
@@ -51,11 +46,17 @@ class Openspeedshop(Package):
variant('frontend', default=False, description="build only the front-end tool using the runtime_dir to point to the target build.")
variant('cuda', default=False, description="build with cuda packages included.")
variant('ptgf', default=False, description="build with the PTGF based gui package enabled.")
variant('intelmic', default=False, description="build for the Intel MIC platform.")
variant('cray', default=False, description="build for Cray platforms.")
variant('bluegene', default=False, description="build for Cray platforms.")
variant('rtfe', default=False, description="build for generic cluster platforms that have different processors on the fe and be nodes.")
# MPI variants
variant('openmpi', default=False, description="Build mpi experiment collector for openmpi MPI when this variant is enabled.")
variant('mpt', default=False, description="Build mpi experiment collector for SGI MPT MPI when this variant is enabled.")
variant('mvapich2', default=False, description="Build mpi experiment collector for mvapich2 MPI when this variant is enabled.")
variant('mvapich', default=False, description="Build mpi experiment collector for mvapich MPI when this variant is enabled.")
variant('mpich2', default=False, description="Build mpi experiment collector for mpich2 MPI when this variant is enabled.")
variant('mpich', default=False, description="Build mpi experiment collector for mpich MPI when this variant is enabled.")
depends_on("cmake@3.0.2")
# Dependencies for openspeedshop that are common to all the variants of the OpenSpeedShop build
depends_on("bison")
depends_on("flex")
@@ -63,8 +64,8 @@ class Openspeedshop(Package):
depends_on("libelf")
depends_on("libdwarf")
depends_on("sqlite")
depends_on("boost@1.50.0")
depends_on("dyninst@8.2.1")
depends_on("boost@1.50.0:")
depends_on("dyninst@9.1.0")
depends_on("python")
depends_on("qt@3.3.8b+krellpatch")
@@ -72,15 +73,78 @@ class Openspeedshop(Package):
depends_on("libunwind", when='+offline')
depends_on("papi", when='+offline')
depends_on("libmonitor+krellpatch", when='+offline')
#depends_on("openmpi+krelloptions", when='+offline')
#depends_on("openmpi", when='+offline')
#depends_on("mpich", when='+offline')
depends_on("openmpi", when='+offline+openmpi')
depends_on("mpich", when='+offline+mpich')
depends_on("mpich2", when='+offline+mpich2')
depends_on("mvapich2", when='+offline+mvapich2')
depends_on("mvapich", when='+offline+mvapich')
depends_on("mpt", when='+offline+mpt')
# Dependencies only for the openspeedshop cbtf package.
depends_on("cbtf", when='+cbtf')
depends_on("cbtf-krell", when='+cbtf')
depends_on("cbtf-argonavis", when='+cbtf')
depends_on("mrnet@4.1.0:+lwthreads", when='+cbtf')
depends_on("cbtf-argonavis", when='+cbtf+cuda')
depends_on("mrnet@5.0.1:+lwthreads+krellpatch", when='+cbtf')
def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions):
# Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings
compile_flags="-O2 -g"
BuildTypeOptions = []
# Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs
for word in cmakeOptions[:]:
if word.startswith('-DCMAKE_BUILD_TYPE'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_CXX_FLAGS'):
cmakeOptions.remove(word)
if word.startswith('-DCMAKE_C_FLAGS'):
cmakeOptions.remove(word)
BuildTypeOptions.extend([
'-DCMAKE_BUILD_TYPE=None',
'-DCMAKE_CXX_FLAGS=%s' % compile_flags,
'-DCMAKE_C_FLAGS=%s' % compile_flags
])
cmakeOptions.extend(BuildTypeOptions)
def set_mpi_cmakeOptions(self, spec, cmakeOptions):
# Appends to cmakeOptions the options that will enable the appropriate MPI implementations
MPIOptions = []
# openmpi
if '+openmpi' in spec:
MPIOptions.extend([
'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix
])
# mpich
if '+mpich' in spec:
MPIOptions.extend([
'-DMPICH_DIR=%s' % spec['mpich'].prefix
])
# mpich2
if '+mpich2' in spec:
MPIOptions.extend([
'-DMPICH2_DIR=%s' % spec['mpich2'].prefix
])
# mvapich
if '+mvapich' in spec:
MPIOptions.extend([
'-DMVAPICH_DIR=%s' % spec['mvapich'].prefix
])
# mvapich2
if '+mvapich2' in spec:
MPIOptions.extend([
'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix
])
# mpt
if '+mpt' in spec:
MPIOptions.extend([
'-DMPT_DIR=%s' % spec['mpt'].prefix
])
cmakeOptions.extend(MPIOptions)
def install(self, spec, prefix):
@@ -100,51 +164,118 @@ def install(self, spec, prefix):
instrumentor_setting = "offline"
if '+runtime' in spec:
with working_dir('build_runtime', create=True):
cmake('..',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DINSTRUMENTOR=%s' % instrumentor_setting,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
*std_cmake_args)
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DINSTRUMENTOR=%s' % instrumentor_setting,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix
])
# Add any MPI implementations coming from variant settings
self.set_mpi_cmakeOptions(spec, cmakeOptions)
cmakeOptions.extend(std_cmake_args)
# Adjust the build options to the favored ones for this build
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")
else:
cmake_prefix_path = join_path(spec['dyninst'].prefix)
with working_dir('build', create=True):
#python_vers=join_path(spec['python'].version[:2])
#'-DOPENMPI_DIR=%s' % openmpi_prefix_path,
#'-DMVAPICH_DIR=%s' % mvapich_prefix_path,
#'-DMPICH_DIR=%s' % spec['mpich'].prefix,
#'-DMPICH2_DIR=%s' % spec['mpich2'].prefix,
#'-DBoost_NO_SYSTEM_PATHS=TRUE',
#'-DBOOST_ROOT=%s' % spec['boost'].prefix,
#'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix,
python_vers='%d.%d' % spec['python'].version[:2]
cmake('..',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DINSTRUMENTOR=%s' % instrumentor_setting,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBELF_DIR=%s' % spec['libelf'].prefix,
'-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DSQLITE3_DIR=%s' % spec['sqlite'].prefix,
'-DQTLIB_DIR=%s' % spec['qt'].prefix,
'-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'),
'-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers,
'-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so',
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
*std_cmake_args)
cmakeOptions = []
cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DINSTRUMENTOR=%s' % instrumentor_setting,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBELF_DIR=%s' % spec['libelf'].prefix,
'-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DSQLITE3_DIR=%s' % spec['sqlite'].prefix,
'-DQTLIB_DIR=%s' % spec['qt'].prefix,
'-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'),
'-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers,
'-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so',
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix
])
# Add any MPI implementations coming from variant settings
self.set_mpi_cmakeOptions(spec, cmakeOptions)
cmakeOptions.extend(std_cmake_args)
# Adjust the build options to the favored ones for this build
self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions)
cmake('..', *cmakeOptions)
make("clean")
make()
make("install")
elif '+cbtf' in spec:
instrumentor_setting = "cbtf"
resolve_symbols = "symtabapi"
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) + ':' + join_path(spec['dyninst'].prefix)
#runtime_platform_cray = "cray"
#if '+cray' in spec:
# if '+runtime' in spec:
# #-DCBTF_KRELL_CN_RUNTIME_DIR=${CBTF_KRELL_CN_INSTALL_DIR} \
# with working_dir('build_cbtf_cray_runtime', create=True):
# python_vers='%d.%d' % spec['python'].version[:2]
# cmake('..',
# '-DCMAKE_INSTALL_PREFIX=%s' % prefix,
# '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
# '-DRUNTIME_PLATFORM=%s' % runtime_platform_cray,
# '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
# '-DRESOLVE_SYMBOLS=%s' % resolve_symbols,
# '-DINSTRUMENTOR=%s' % instrumentor_setting,
# '-DCBTF_DIR=%s' % spec['cbtf'].prefix,
# '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
# '-DCBTF_KRELL_CN_RUNTIME_DIR=%s' % spec['cbtf-krell'].prefix,
# '-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
# '-DLIBELF_DIR=%s' % spec['libelf'].prefix,
# '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix,
# '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
# '-DPAPI_DIR=%s' % spec['papi'].prefix,
# '-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
# '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
# '-DMRNET_DIR=%s' % spec['mrnet'].prefix,
# '-DBoost_NO_SYSTEM_PATHS=TRUE',
# '-DBOOST_ROOT=%s' % spec['boost'].prefix,
# *std_cmake_args)
# make("clean")
# make()
# make("install")
#elif '+mic' in spec:
# comment out else and shift over the default case below until arch detection is in
#else:
if '+runtime' in spec:
with working_dir('build_cbtf_runtime', create=True):
python_vers='%d.%d' % spec['python'].version[:2]
@@ -203,14 +334,63 @@ def install(self, spec, prefix):
# tbd
#if '+intelmic' in spec:
# with working_dir('build_intelmic_compute', create=True):
# tbd
# with working_dir('build_intelmic_frontend', create=True):
# tbd
#if '+cray' in spec:
# with working_dir('build_cray_compute', create=True):
# tbd
# with working_dir('build_cray_frontend', create=True):
# tbd
#if '+cbtf' in spec:
# if cray build type detected:
# if '+runtime' in spec:
# with working_dir('build_cray_cbtf_compute', create=True):
# tbd
# else:
# with working_dir('build_cray_cbtf_frontend', create=True):
# tbd
# with working_dir('build_cray_osscbtf_frontend', create=True):
# tbd
# fi
# elif '+intelmic' in spec:
# if '+runtime' in spec:
# with working_dir('build_intelmic_cbtf_compute', create=True):
# tbd
# else:
# with working_dir('build_intelmic_cbtf_frontend', create=True):
# tbd
# with working_dir('build_intelmic_osscbtf_frontend', create=True):
# fi
# else
# with working_dir('build_cluster_cbtf', create=True):
# tbd
# with working_dir('build_cluster osscbtf', create=True):
# tbd
# fi
#elif '+offline' in spec:
# if cray build type detected:
# if '+runtime' in spec:
# with working_dir('build_cray_ossoff_compute', create=True):
# tbd
# else:
# with working_dir('build_cray_ossoff_frontend', create=True):
# tbd
# fi
# elif '+intelmic' in spec:
# if '+runtime' in spec:
# with working_dir('build_intelmic_ossoff_compute', create=True):
# tbd
# else:
# with working_dir('build_intelmic_ossoff_frontend', create=True):
# tbd
# fi
# elif bgq build type detected:
# if '+runtime' in spec:
# with working_dir('build_bgq_ossoff_compute', create=True):
# tbd
# else:
# with working_dir('build_bgq_ossoff_frontend', create=True):
# tbd
# fi
# else
# with working_dir('build_cluster ossoff', create=True):
# tbd
# fi
#fi

18
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@@ -11,11 +11,25 @@ class ParallelNetcdf(Package):
version('1.7.0', '267eab7b6f9dc78c4d0e6def2def3aea4bc7c9f0')
version('1.6.1', '62a094eb952f9d1e15f07d56e535052604f1ac34')
variant('cxx', default=True, description='Build the C++ Interface')
variant('fortran', default=True, description='Build the Fortran Interface')
variant('fpic', default=True, description='Produce position-independent code (for use with shared libraries)')
depends_on("m4")
depends_on("mpi")
# See: https://trac.mcs.anl.gov/projects/parallel-netcdf/browser/trunk/INSTALL
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--with-mpi=%s" % spec['mpi'].prefix)
args = list()
if '+fpic' in spec:
args.extend(['CFLAGS=-fPIC', 'CXXFLAGS=-fPIC', 'FFLAGS=-fPIC'])
if '~cxx' in spec:
args.append('--disable-cxx')
if '~fortran' in spec:
args.append('--disable-fortran')
args.extend(["--prefix=%s" % prefix,
"--with-mpi=%s" % spec['mpi'].prefix])
configure(*args)
make()
make("install")

14
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@@ -0,0 +1,14 @@
from spack import *
class PyArgcomplete(Package):
"""Bash tab completion for argparse."""
homepage = "https://pypi.python.org/pypi/argcomplete"
url = "https://pypi.python.org/packages/source/a/argcomplete/argcomplete-1.1.1.tar.gz"
version('1.1.1', '89a3839096c9f991ad33828e72d21abf')
extends('python')
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

22
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@@ -0,0 +1,22 @@
from spack import depends_on, extends, version
from spack import Package
class PyAstroid(Package):
homepage = "https://www.astroid.org/"
url = "https://github.com/PyCQA/astroid/archive/astroid-1.4.5.tar.gz"
version('1.4.5', '7adfc55809908297ef430efe4ea20ac3')
version('1.4.4', '8ae6f63f6a2b260bb7f647dafccbc796')
version('1.4.3', '4647159de7d4d0c4b1de23ecbfb8e246')
version('1.4.2', '677f7965840f375af51b0e86403bee6a')
version('1.4.1', 'ed70bfed5e4b25be4292e7fe72da2c02')
extends('python')
depends_on('py-logilab-common')
depends_on('py-setuptools')
depends_on('py-six')
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

18
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@@ -0,0 +1,18 @@
from spack import version, extends, depends_on
from spack import Package
class PyGenshi(Package):
"""Python toolkit for generation of output for the web"""
homepage = "https://genshi.edgewall.org/"
url = "http://ftp.edgewall.com/pub/genshi/Genshi-0.7.tar.gz"
version('0.7', '54e64dd69da3ec961f86e686e0848a82')
version('0.6.1', '372c368c8931110b0a521fa6091742d7')
version('0.6', '604e8b23b4697655d36a69c2d8ef7187')
extends("python")
depends_on("py-setuptools")
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

27
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@@ -0,0 +1,27 @@
from spack import depends_on, extends, version
from spack import Package
class PyJinja2(Package):
"""
Jinja2 is a template engine written in pure Python. It provides
a Django inspired non-XML syntax but supports inline expressions
and an optional sandboxed environment.
"""
homepage = "http://jinja.pocoo.org/"
url = "https://github.com/pallets/jinja/archive/2.8.tar.gz"
version('2.8', '4114200650d7630594e3bc70af23f59e')
version('2.7.3', '55b87bdc8e585b8b5b86734eefce2621')
version('2.7.2', '8e8f226809ae6363009b9296e30adf30')
version('2.7.1', '69b6675553c81b1087f95cae7f2179bb')
version('2.7', 'ec70433f325051dcedacbb2465028a35')
extends("python")
depends_on("py-setuptools")
depends_on("py-markupsafe")
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

18
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@@ -0,0 +1,18 @@
from spack import depends_on, extends, version
from spack import Package
class PyLogilabCommon(Package):
"""Common modules used by Logilab projects"""
homepage = "https://www.logilab.org/project/logilab-common"
url = "https://pypi.python.org/packages/a7/31/1650d23e44794d46935d82b86e73454cc83b814cbe1365260ccce8a2f4c6/logilab-common-1.2.0.tar.gz"
version('1.2.0', 'f7b51351b7bfe052746fa04c03253c0b')
extends("python")
depends_on("py-setuptools")
depends_on("py-six")
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

27
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@@ -0,0 +1,27 @@
from spack import depends_on, extends, version
from spack import Package
class PyMarkupsafe(Package):
"""
MarkupSafe is a library for Python that implements a unicode
string that is aware of HTML escaping rules and can be used
to implement automatic string escaping. It is used by Jinja 2,
the Mako templating engine, the Pylons web framework and many more.
"""
homepage = "http://www.pocoo.org/projects/markupsafe/"
url = "https://github.com/pallets/markupsafe/archive/0.23.tar.gz"
version('0.23', '1a0dadc95169832367c9dcf142155cde')
version('0.22', '7a2ac7427b58def567628d06dc328396')
version('0.21', 'aebcd93ee05269773c8b80bb6c86fc2f')
version('0.20', '0c1fef97c8fd6a986d708f08d7f84a02')
version('0.19', '64b05361adb92c11839fc470e308c593')
extends("python")
depends_on("py-setuptools")
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

22
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@@ -0,0 +1,22 @@
from spack import depends_on, extends, version
from spack import Package
class PyMistune(Package):
"""
Python markdown parser
"""
homepage = "http://mistune.readthedocs.org/en/latest/"
url = "https://github.com/lepture/mistune/archive/v0.7.1.tar.gz"
version('0.7.1', '0d9c29700c670790c5b2471070d32ec2')
version('0.7', '77750ae8b8d0d584894224a7e0c0523a')
version('0.6', 'd4f3d4f28a69e715f82b591d5dacf9a6')
version('0.5.1', '1c6cfce28a4aa90cf125217cd6c6fe6c')
version('0.5', '997736554f1f95eea78c66ae339b5722')
extends('python')
depends_on('py-setuptools')
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

20
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@@ -0,0 +1,20 @@
from spack import depends_on, extends, version
from spack import Package
class PyPrettytable(Package):
"""
PrettyTable is a simple Python library designed to make
it quick and easy to represent tabular data in visually
appealing ASCII tables
"""
homepage = "https://code.google.com/archive/p/prettytable/"
url = "https://pypi.python.org/packages/e0/a1/36203205f77ccf98f3c6cf17cf068c972e6458d7e58509ca66da949ca347/prettytable-0.7.2.tar.gz"
version('0.7.2', 'a6b80afeef286ce66733d54a0296b13b')
extends("python")
depends_on("py-setuptools")
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

22
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@@ -0,0 +1,22 @@
from spack import depends_on, extends, version
from spack import Package
class PyPy2neo(Package):
"""FIXME: put a proper description of your package here."""
# FIXME: add a proper url for your package's homepage here.
homepage = "http://www.example.com"
url = "https://github.com/nigelsmall/py2neo/archive/py2neo-2.0.8.tar.gz"
version('2.0.8', 'e3ec5172a9e006515ef4155688a05a55')
version('2.0.7', '4cfbc5b7dfd7757f3d2e324805faa639')
version('2.0.6', '53e4cdb1a95fbae501c66e541d5f4929')
version('2.0.5', '143b1f9c0aa22faf170c1b9f84c7343b')
version('2.0.4', 'b3f7efd3344dc3f66db4eda11e5899f7')
depends_on("py-setuptools")
extends("python")
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

16
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@@ -0,0 +1,16 @@
from spack import depends_on, extends, version
from spack import Package
class PyStorm(Package):
"""Storm is an object-relational mapper (ORM) for Python"""
homepage = "https://storm.canonical.com/"
url = "https://launchpad.net/storm/trunk/0.20/+download/storm-0.20.tar.gz"
version('0.20', '8628503141f0f06c0749d607ac09b9c7')
extends('python')
depends_on('py-setuptools')
def install(self, spec, prefix):
python('setup.py', 'install', '--prefix=%s' % prefix)

14
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@@ -0,0 +1,14 @@
from spack import *
class RBiocgenerics(Package):
"""S4 generic functions needed by many Bioconductor packages."""
homepage = 'https://www.bioconductor.org/packages/release/bioc/html/BiocGenerics.html'
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz"
version('0.16.1', 'c2148ffd86fc6f1f819c7f68eb2c744f', expand=False)
extends('R')
def install(self, spec, prefix):
R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' % self.stage.archive_file)

18
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@@ -0,0 +1,18 @@
from spack import *
class RAbind(Package):
"""Combine multidimensional arrays into a single array. This is a
generalization of 'cbind' and 'rbind'. Works with vectors, matrices, and
higher-dimensional arrays. Also provides functions 'adrop', 'asub', and
'afill' for manipulating, extracting and replacing data in arrays."""
homepage = "https://cran.r-project.org/"
url = "https://cran.r-project.org/src/contrib/abind_1.4-3.tar.gz"
version('1.4-3', '10fcf80c677b991bf263d38be35a1fc5', expand=False)
extends('R')
def install(self, spec, prefix):
R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' % self.stage.archive_file)

22
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@@ -0,0 +1,22 @@
from spack import *
class RFilehash(Package):
"""Implements a simple key-value style database where character string keys
are associated with data values that are stored on the disk. A simple
interface is provided for inserting, retrieving, and deleting data from the
database. Utilities are provided that allow 'filehash' databases to be
treated much like environments and lists are already used in R. These
utilities are provided to encourage interactive and exploratory analysis on
large datasets. Three different file formats for representing the database
are currently available and new formats can easily be incorporated by third
parties for use in the 'filehash' framework."""
homepage = 'https://cran.r-project.org/'
url = "https://cran.r-project.org/src/contrib/filehash_2.3.tar.gz"
version('2.3', '01fffafe09b148ccadc9814c103bdc2f', expand=False)
extends('R')
def install(self, spec, prefix):
R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' % self.stage.archive_file)

19
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@@ -0,0 +1,19 @@
from spack import *
class RMagic(Package):
"""A collection of efficient, vectorized algorithms for the creation and
investigation of magic squares and hypercubes, including a variety of
functions for the manipulation and analysis of arbitrarily dimensioned
arrays."""
homepage = "https://cran.r-project.org/"
url = "https://cran.r-project.org/src/contrib/magic_1.5-6.tar.gz"
version('1.5-6', 'a68e5ced253b2196af842e1fc84fd029', expand=False)
extends('R')
depends_on('r-abind')
def install(self, spec, prefix):
R('CMD', 'INSTALL', '--library=%s' % self.module.r_lib_dir, '%s' % self.stage.archive_file)

5
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@@ -0,0 +1,5 @@
esmumps : scotch
(cd esmumps ; $(MAKE) scotch && $(MAKE) install)
ptesmumps : ptscotch
(cd esmumps ; $(MAKE) ptscotch && $(MAKE) ptinstall)

170
var/spack/repos/builtin/packages/scotch/package.py
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@@ -1,88 +1,125 @@
from spack import *
import os
import os, re
class Scotch(Package):
"""Scotch is a software package for graph and mesh/hypergraph
partitioning, graph clustering, and sparse matrix ordering."""
homepage = "http://www.labri.fr/perso/pelegrin/scotch/"
url = "http://gforge.inria.fr/frs/download.php/file/34099/scotch_6.0.3.tar.gz"
url = "http://gforge.inria.fr/frs/download.php/latestfile/298/scotch_6.0.3.tar.gz"
base_url = "http://gforge.inria.fr/frs/download.php/latestfile/298"
list_url = "http://gforge.inria.fr/frs/?group_id=248"
version('6.0.3', '10b0cc0f184de2de99859eafaca83cfc')
version('6.0.0', 'c50d6187462ba801f9a82133ee666e8e')
version('5.1.10b', 'f587201d6cf5cf63527182fbfba70753')
variant('mpi', default=False, description='Activate the compilation of PT-Scotch')
variant('compression', default=True, description='Activate the posibility to use compressed files')
variant('esmumps', default=False, description='Activate the compilation of the lib esmumps needed by mumps')
variant('shared', default=True, description='Build shared libraries')
depends_on('mpi', when='+mpi')
depends_on('zlib', when='+compression')
depends_on('flex')
depends_on('bison')
depends_on('mpi', when='+mpi')
depends_on('zlib', when='+compression')
def compiler_specifics(self, makefile_inc, defines):
if self.compiler.name == 'gcc':
defines.append('-Drestrict=__restrict')
elif self.compiler.name == 'intel':
defines.append('-restrict')
# NOTE: Versions of Scotch up to version 6.0.0 don't include support for
# building with 'esmumps' in their default packages. In order to enable
# support for this feature, we must grab the 'esmumps' enabled archives
# from the Scotch hosting site. These alternative archives include a strict
# superset of the behavior in their default counterparts, so we choose to
# always grab these versions for older Scotch versions for simplicity.
@when('@:6.0.0')
def url_for_version(self, version):
return '%s/scotch_%s_esmumps.tar.gz' % (Scotch.base_url, version)
makefile_inc.append('CCS = $(CC)')
if '+mpi' in self.spec:
makefile_inc.extend([
'CCP = %s' % os.path.join(self.spec['mpi'].prefix.bin, 'mpicc'),
'CCD = $(CCP)'
])
else:
makefile_inc.extend([
'CCP = mpicc', # It is set but not used
'CCD = $(CCS)'
])
def library_build_type(self, makefile_inc, defines):
makefile_inc.extend([
'LIB = .a',
'CLIBFLAGS = ',
'RANLIB = ranlib',
'AR = ar',
'ARFLAGS = -ruv '
])
@when('+shared')
def library_build_type(self, makefile_inc, defines):
makefile_inc.extend([
'LIB = .so',
'CLIBFLAGS = -shared -fPIC',
'RANLIB = echo',
'AR = $(CC)',
'ARFLAGS = -shared $(LDFLAGS) -o'
])
def extra_features(self, makefile_inc, defines):
ldflags = []
if '+compression' in self.spec:
defines.append('-DCOMMON_FILE_COMPRESS_GZ')
ldflags.append('-L%s -lz' % (self.spec['zlib'].prefix.lib))
defines.append('-DCOMMON_PTHREAD')
ldflags.append('-lm -lrt -pthread')
makefile_inc.append('LDFLAGS = %s' % ' '.join(ldflags))
@when('@6.0.1:')
def url_for_version(self, version):
return super(Scotch, self).url_for_version(version)
# NOTE: Several of the 'esmumps' enabled Scotch releases up to version 6.0.0
# have broken build scripts that don't properly build 'esmumps' as a separate
# target, so we need a patch procedure to remove 'esmumps' from existing targets
# and to add it as a standalone target.
@when('@:6.0.0')
def patch(self):
makefile_path = os.path.join('src', 'Makefile')
with open(makefile_path, 'r') as makefile:
esmumps_enabled = any(re.search(r'^esmumps(\s*):(.*)$', line) for line in makefile.readlines())
if not esmumps_enabled:
mff = FileFilter(makefile_path)
mff.filter(r'^.*((esmumps)|(ptesmumps)).*(install).*$', '')
makefile_esmumps_path = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'Makefile.esmumps')
with open(makefile_path, 'a') as makefile:
makefile.write('\ninclude %s\n' % makefile_esmumps_path)
@when('@6.0.1:')
def patch(self):
pass
# NOTE: Configuration of Scotch is achieved by writing a 'Makefile.inc' file
# that contains all of the configuration variables and their desired values
# for the installation. This function writes this file based on the given
# installation variants.
def configure(self):
makefile_inc = []
defines = [
cflags = [
'-O3',
'-DCOMMON_RANDOM_FIXED_SEED',
'-DSCOTCH_DETERMINISTIC',
'-DSCOTCH_RENAME',
'-DIDXSIZE64' ]
'-DIDXSIZE64'
]
self.library_build_type(makefile_inc, defines)
self.compiler_specifics(makefile_inc, defines)
self.extra_features(makefile_inc, defines)
## Library Build Type ##
if '+shared' in self.spec:
makefile_inc.extend([
'LIB = .so',
'CLIBFLAGS = -shared -fPIC',
'RANLIB = echo',
'AR = $(CC)',
'ARFLAGS = -shared $(LDFLAGS) -o'
])
cflags.append('-fPIC')
else:
makefile_inc.extend([
'LIB = .a',
'CLIBFLAGS = ',
'RANLIB = ranlib',
'AR = ar',
'ARFLAGS = -ruv '
])
## Compiler-Specific Options ##
if self.compiler.name == 'gcc':
cflags.append('-Drestrict=__restrict')
elif self.compiler.name == 'intel':
cflags.append('-restrict')
makefile_inc.append('CCS = $(CC)')
makefile_inc.append('CCP = %s' %
(self.spec['mpi'].mpicc if '+mpi' in self.spec else 'mpicc'))
makefile_inc.append('CCD = $(CCS)')
## Extra Features ##
ldflags = []
if '+compression' in self.spec:
cflags.append('-DCOMMON_FILE_COMPRESS_GZ')
ldflags.append('-L%s -lz' % (self.spec['zlib'].prefix.lib))
cflags.append('-DCOMMON_PTHREAD')
ldflags.append('-lm -lrt -pthread')
makefile_inc.append('LDFLAGS = %s' % ' '.join(ldflags))
## General Features ##
makefile_inc.extend([
'EXE =',
@@ -93,18 +130,19 @@ def patch(self):
'MKDIR = mkdir',
'MV = mv',
'CP = cp',
'CFLAGS = -O3 %s' % (' '.join(defines)),
'CFLAGS = %s' % ' '.join(cflags),
'LEX = %s -Pscotchyy -olex.yy.c' % os.path.join(self.spec['flex'].prefix.bin , 'flex'),
'YACC = %s -pscotchyy -y -b y' % os.path.join(self.spec['bison'].prefix.bin, 'bison'),
'prefix = %s' % self.prefix,
''
'prefix = %s' % self.prefix
])
with working_dir('src'):
with open('Makefile.inc', 'w') as fh:
fh.write('\n'.join(makefile_inc))
def install(self, spec, prefix):
self.configure()
targets = ['scotch']
if '+mpi' in self.spec:
targets.append('ptscotch')
@@ -115,12 +153,10 @@ def install(self, spec, prefix):
targets.append('ptesmumps')
with working_dir('src'):
for app in targets:
make(app, parallel=(not app=='ptesmumps'))
for target in targets:
make(target, parallel=(target!='ptesmumps'))
install_tree('bin', prefix.bin)
install_tree('lib', prefix.lib)
install_tree('include', prefix.include)
install_tree('man/man1', prefix.share_man1)

4
var/spack/repos/builtin/packages/silo/package.py
View File

@@ -1,5 +1,6 @@
from spack import *
class Silo(Package):
"""Silo is a library for reading and writing a wide variety of scientific
data to binary, disk files."""
@@ -12,6 +13,7 @@ class Silo(Package):
version('4.8', 'b1cbc0e7ec435eb656dc4b53a23663c9')
variant('fortran', default=True, description='Enable Fortran support')
variant('shared', default=True, description='Build shared libraries')
variant('silex', default=False, description='Builds Silex, a GUI for viewing Silo files')
depends_on('hdf5')
@@ -21,6 +23,7 @@ def install(self, spec, prefix):
config_args = [
'--enable-fortran' if '+fortran' in spec else '--disable-fortran',
'--enable-silex' if '+silex' in spec else '--disable-silex',
'--enable-shared' if '+shared' in spec else '--disable-shared',
]
if '+silex' in spec:
@@ -30,6 +33,7 @@ def install(self, spec, prefix):
'--prefix=%s' % prefix,
'--with-hdf5=%s,%s' % (spec['hdf5'].prefix.include, spec['hdf5'].prefix.lib),
'--with-zlib=%s,%s' % (spec['zlib'].prefix.include, spec['zlib'].prefix.lib),
'--enable-install-lite-headers',
*config_args)
make()

1
var/spack/repos/builtin/packages/the_silver_searcher/package.py
View File

@@ -9,6 +9,7 @@ class TheSilverSearcher(Package):
depends_on('pcre')
depends_on('xz')
depends_on('pkg-config')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)

12
var/spack/repos/builtin/packages/unibilium/package.py Normal file
View File

@@ -0,0 +1,12 @@
from spack import *
class Unibilium(Package):
"""A terminfo parsing library"""
homepage = "https://github.com/mauke/unibilium"
url = "https://github.com/mauke/unibilium/archive/v1.2.0.tar.gz"
version('1.2.0', '9b1c97839a880a373da6c097443b43c4')
def install(self, spec, prefix):
make("PREFIX="+prefix)
make("install", "PREFIX="+prefix)

31
var/spack/repos/builtin/packages/visit/package.py Normal file
View File

@@ -0,0 +1,31 @@
from spack import *
class Visit(Package):
"""VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool."""
homepage = "https://wci.llnl.gov/simulation/computer-codes/visit/"
url = "http://portal.nersc.gov/project/visit/releases/2.10.1/visit2.10.1.tar.gz"
version('2.10.1', '3cbca162fdb0249f17c4456605c4211e')
version('2.10.2', '253de0837a9d69fb689befc98ea4d068')
depends_on("vtk@6.1.0~opengl2")
depends_on("qt@4.8.6")
depends_on("python")
depends_on("silo+shared")
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
feature_args = std_cmake_args[:]
feature_args.extend(["-DVTK_MAJOR_VERSION=6",
"-DVTK_MINOR_VERSION=1",
"-DVISIT_LOC_QMAKE_EXE:FILEPATH=%s/qmake-qt4" % spec['qt'].prefix.bin,
"-DPYTHON_EXECUTABLE:FILEPATH=%s/python" % spec['python'].prefix.bin,
"-DVISIT_SILO_DIR:PATH=%s" % spec['silo'].prefix,
"-DVISIT_HDF5_DIR:PATH=%s" % spec['hdf5'].prefix])
cmake('../src', *feature_args)
make()
make("install")

16
var/spack/repos/builtin/packages/xerces-c/package.py
View File

@@ -1,19 +1,3 @@
# FIXME:
# This is a template package file for Spack. We've conveniently
# put "FIXME" labels next to all the things you'll want to change.
#
# Once you've edited all the FIXME's, delete this whole message,
# save this file, and test out your package like this:
#
# spack install xerces-c
#
# You can always get back here to change things with:
#
# spack edit xerces-c
#
# See the spack documentation for more information on building
# packages.
#
from spack import *
class XercesC(Package):