Add package for mafft
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var/spack/repos/builtin/packages/mafft/package.py
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var/spack/repos/builtin/packages/mafft/package.py
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Mafft(Package):
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"""MAFFT is a multiple sequence alignment program for unix-like
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operating systems. It offers a range of multiple alignment
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methods, L-INS-i (accurate; for alignment of <~200 sequences),
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FFT-NS-2 (fast; for alignment of <~30,000 sequences), etc."""
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homepage = "http://mafft.cbrc.jp/alignment/software/index.html"
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url = "http://mafft.cbrc.jp/alignment/software/mafft-7.221-with-extensions-src.tgz"
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version('7.221', 'b1aad911e51024d631722a2e061ba215')
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def install(self, spec, prefix):
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with working_dir('core'):
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make('PREFIX=%s' % prefix)
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make('PREFIX=%s' % prefix, 'install')
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