Standardize package names: lower-case, not Mixed_CASE (#2475)

* Rename packages

* Upcasing depends_on() in packages.

* Downcased extends('r')

* Fixed erroneously changed URL that had slipped through.

* Fixed typo

* Fixed link from documentation into package source code.

* Fixed another doc problem.

* Changed underscores to dashes in package names.

* Added test to enforce lowercase, no-underscore naming convention.

* Fix r-xgboost

* Downcase more instances of 'R' in package auto-creation.

* Fix test.

* Converted unit test packages to use dashes not underscores

* Downcase `r` in the docs.

* Update module_file_support.rst

Fix r->R for class R.

var/spack/repos/builtin/packages/octopus/package.py

@@ -42,8 +42,8 @@ class Octopus(Package):
     depends_on('fftw+mpi')
 
     # optional dependencies:
-    # TODO: scalapack, metis, parmetis, netcdf, etsf_io, SPARSKIT, ARPACK,
-    # FEAST, Libfm, PFFT, ISF, PNFFT
+    # TODO: scalapack, metis, parmetis, netcdf, etsf-io, sparskit, arpack,
+    # feast, libfm, pfft, isf, pnfft
 
     def install(self, spec, prefix):
         lapack = spec['lapack'].lapack_libs