fastq-screen: new package (#5431)

* fastq-screen: new package

* fixing descriptions and previously made packages' old copyright date

* added wrong perl package after change

var/spack/repos/builtin/packages/fastq-screen/package.py

@@ -0,0 +1,46 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class FastqScreen(Package):
+    """FastQ Screen allows you to screen a library of sequences in FastQ format
+       against a set of sequence databases so you can see if the composition of
+       the library matches with what you expect."""
+
+    homepage = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/"
+    url      = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/fastq_screen_v0.11.2.tar.gz"
+
+    version('0.11.2', 'ef79f16ee553aaa0ab2fc14ea11e5473')
+
+    depends_on('perl', type='run')
+    depends_on('perl-gd-graph', type='run')
+    depends_on('bowtie')
+    depends_on('bowtie2')
+    depends_on('bwa')
+    depends_on('samtools')
+
+    def install(self, spec, prefix):
+        install_tree('.', prefix.bin)