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freebayes: Fix running the testsuite and add pkgconfig (#26440)

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freebayes needs the tools of the vcflib it includes to run tests
This commit is contained in:
Bernhard Kaindl 2021-10-04 14:00:08 +02:00 committed by GitHub
parent 225927c1c3
commit 3fff338844
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1 changed files with 20 additions and 0 deletions
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var/spack/repos/builtin/packages/freebayes/package.py
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@ -23,6 +23,7 @@ class Freebayes(MesonPackage):
# Deps for @1.3.5 and beyond
depends_on('ninja', type='build', when='@1.3.5:')
depends_on('pkgconfig', type='build', when='@1.3.5:')
depends_on('htslib', when='@1.3.5:')
depends_on('zlib', when='@1.3.5:')
depends_on('xz', when='@1.3.5:')
@ -56,3 +57,22 @@ def build(self, spec, prefix):
@when('@:1.1.0')
def install(self, spec, prefix):
make('install')
@property
def vcflib_builddir(self):
return join_path(self.build_directory, 'vcflib')
@when('@1.3.4:')
def setup_build_environment(self, env):
if self.run_tests:
env.prepend_path('PATH', self.vcflib_builddir)
env.prepend_path('PATH', self.build_directory)
@when('@1.3.4:')
def check(self):
mkdir(self.vcflib_builddir)
with working_dir(self.vcflib_builddir):
cmake('../../vcflib')
make()
with working_dir(self.build_directory):
ninja('test')