phrap-crossmatch-swat: new package at 1.090518 (#10529)

var/spack/repos/builtin/packages/phrap-crossmatch-swat/package.py

@@ -0,0 +1,25 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+import os
+
+
+class PhrapCrossmatchSwat(MakefilePackage):
+    """phrap is a program for assembling shotgun DNA sequence data.
+       cross_match is a general purpose utility for comparing any two DNA
+       sequence sets using a 'banded' version of swat.
+       swat is a program for searching one or more DNA or protein query
+       sequences, or a query profile, against a sequence database"""
+
+    homepage = "http://www.phrap.org/phredphrapconsed.html"
+    url      = "file://{0}/phrap-crossmatch-swat-1.090518.tar.gz".format(os.getcwd())
+
+    version('1.090518', sha256='81f50c4410e8604cdefcc34ef6dc7b037be3bb45b94c439611a5590c1cf83665')
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        for b in ['phrap', 'cross_match', 'swat']:
+            install(b, prefix.bin)