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htslib, STAR: add zlib-ng conflict (#44261)

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This commit is contained in:
Teague Sterling
2024-05-20 00:20:19 -07:00
committed by GitHub
parent c99174798b
commit 419f0742a0
2 changed files with 5 additions and 0 deletions
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3
var/spack/repos/builtin/packages/htslib/package.py
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@@ -16,6 +16,7 @@ class Htslib(AutotoolsPackage):
license("MIT AND BSD-3-Clause-Modification") license("MIT AND BSD-3-Clause-Modification")
version("1.20", sha256="e52d95b14da68e0cfd7d27faf56fef2f88c2eaf32a2be51c72e146e3aa928544")
version("1.19.1", sha256="222d74d3574fb67b158c6988c980eeaaba8a0656f5e4ffb76b5fa57f035933ec") version("1.19.1", sha256="222d74d3574fb67b158c6988c980eeaaba8a0656f5e4ffb76b5fa57f035933ec")
version("1.19", sha256="8751c40c4fa7d1f23a6864c5b20a73744f8be68239535ae7729c5f7d394d0736") version("1.19", sha256="8751c40c4fa7d1f23a6864c5b20a73744f8be68239535ae7729c5f7d394d0736")
version("1.18", sha256="f1ab53a593a2320a1bfadf4ef915dae784006c5b5c922c8a8174d7530a9af18f") version("1.18", sha256="f1ab53a593a2320a1bfadf4ef915dae784006c5b5c922c8a8174d7530a9af18f")
@@ -60,6 +61,8 @@ class Htslib(AutotoolsPackage):
depends_on("automake", when="@1.2") depends_on("automake", when="@1.2")
depends_on("libtool", when="@1.2") depends_on("libtool", when="@1.2")
conflicts("zlib-ng", when="@:1.12") # https://github.com/samtools/htslib/issues/1257
@property @property
def libs(self): def libs(self):
return find_libraries("libhts", root=self.prefix, recursive=True) return find_libraries("libhts", root=self.prefix, recursive=True)

2
var/spack/repos/builtin/packages/star/package.py
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@@ -41,6 +41,8 @@ class Star(MakefilePackage):
# required for certain steps in the makefile # required for certain steps in the makefile
depends_on("xxd", type="build") depends_on("xxd", type="build")
conflicts("zlib-ng") # https://github.com/alexdobin/STAR/issues/2063
build_directory = "source" build_directory = "source"
def edit(self, spec, prefix): def edit(self, spec, prefix):