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bioconductor update (#5786)

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* r-a4: Add r dependency and update url.

* r-a4base: Add r dependency and update url.

* r-a4classif: update url and add r dependency.

* r-a4core: Update url and add r dependency.

* r-a4preproc: Update url and add r dependency.

* r-a4reporting: Update url and add r dependency.

* r-abaenrichment: Update url and add r dependency.

* r-absseq: Update url and add r dependency.

* r-acgh: Update url and add r dependency.

* r-acme: Update url and add r dependency.

* r-adsplit: Update url and add r dependency.

* r-affxparser: Update url and add r dependency.

* r-affycomp: Update url and add r dependency.

* r-affycompatible: Update url and add r dependency.

* r-affycontam: Update url and add r dependency.

* r-annaffy: Update url and add r dependency.

* r-annotate: Update url and add r dependency.

* r-annotate: Update url and add r dependency.

* r-annotationdbi: Update url and add r dependency.

* r-genefilter: Update url and add r dependency.

* r-mlinterfaces: Update url and add r dependency.

* r-limma: Update url and add r dependency.

* r-multtest: Update url and add r dependency.

* r-a4classif: Correct format.

* r-affycomp: Correct error.
This commit is contained in:
lingnanyuan
2017-10-24 04:19:19 -05:00
committed by Todd Gamblin
parent f9f0c1472f
commit 420048350f
22 changed files with 71 additions and 47 deletions
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5
var/spack/repos/builtin/packages/r-a4base/package.py
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@@ -29,10 +29,11 @@ class RA4base(RPackage):
"""Automated Affymetrix Array Analysis."""
homepage = "https://www.bioconductor.org/packages/a4Base/"
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/a4Base_1.24.0.tar.gz"
url = "'https://git.bioconductor.org/packages/a4Base'"
list_url = homepage
version('1.24.0', '98f53cb437f1b8bb7ba8c2628c0f44c6')
version('1.24.0', git='https://git.bioconductor.org/packages/a4Base', commit='f674afe424a508df2c8ee6c87a06fbd4aa410ef6')
depends_on('r@3.4.0:3.4.9', when='@1.24.0')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-annaffy', type=('build', 'run'))