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bioconductor update (#5786)

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* r-a4: Add r dependency and update url.

* r-a4base: Add r dependency and update url.

* r-a4classif: update url and add r dependency.

* r-a4core: Update url and add r dependency.

* r-a4preproc: Update url and add r dependency.

* r-a4reporting: Update url and add r dependency.

* r-abaenrichment: Update url and add r dependency.

* r-absseq: Update url and add r dependency.

* r-acgh: Update url and add r dependency.

* r-acme: Update url and add r dependency.

* r-adsplit: Update url and add r dependency.

* r-affxparser: Update url and add r dependency.

* r-affycomp: Update url and add r dependency.

* r-affycompatible: Update url and add r dependency.

* r-affycontam: Update url and add r dependency.

* r-annaffy: Update url and add r dependency.

* r-annotate: Update url and add r dependency.

* r-annotate: Update url and add r dependency.

* r-annotationdbi: Update url and add r dependency.

* r-genefilter: Update url and add r dependency.

* r-mlinterfaces: Update url and add r dependency.

* r-limma: Update url and add r dependency.

* r-multtest: Update url and add r dependency.

* r-a4classif: Correct format.

* r-affycomp: Correct error.
This commit is contained in:
lingnanyuan
2017-10-24 04:19:19 -05:00
committed by Todd Gamblin
parent f9f0c1472f
commit 420048350f
22 changed files with 71 additions and 47 deletions
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5
var/spack/repos/builtin/packages/r-annotate/package.py
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@@ -29,10 +29,11 @@ class RAnnotate(RPackage):
"""Using R enviroments for annotation."""
homepage = "https://www.bioconductor.org/packages/annotate/"
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/annotate_1.54.0.tar.gz"
url = "https://git.bioconductor.org/packages/annotate"
list_url = homepage
version('1.54.0', '01a4961ef28fc88943e168f946592d44')
version('1.54.0', git='https://git.bioconductor.org/packages/annotate', commit='860cc5b696795a31b18beaf4869f9c418d74549e')
depends_on('r@3.4.0:3.4.9', when='@1.54.0')
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-xml', type=('build', 'run'))
depends_on('r-rcurl', type=('build', 'run'))