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r-diversitree: new package (#9893)

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* r-diversitree: new package

* r-diversitree: system reqs
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Levi Baber 2018-11-19 20:41:01 -06:00 committed by Adam J. Stewart
parent 7e1f96c0aa
commit 43a26d0850
1 changed files with 33 additions and 0 deletions
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var/spack/repos/builtin/packages/r-diversitree/package.py Normal file
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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RDiversitree(RPackage):
"""Contains a number of comparative 'phylogenetic' methods.
Mostly focusing on analysing diversification and character
evolution. Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant
rate 'speciation' and extinction."""
homepage = "http://www.zoology.ubc.ca/prog/diversitree"
url = "https://cran.r-project.org/src/contrib/diversitree_0.9-10.tar.gz"
list_url = "https://cron.r-project.org/src/contrib/Archive/diversitree"
version('0.9-10', sha256='e7df5910c8508a5c2c2d6d3deea53dd3f947bb762196901094c32a7033cb043e')
depends_on('r@2.1.0:', type=('build', 'run'))
depends_on('r-ape', type=('build', 'run'))
depends_on('r-desolve@1.7:', type=('build', 'run'))
depends_on('r-subplex', type=('build', 'run'))
depends_on('r-rcpp@0.10.0:', type=('build', 'run'))
depends_on('fftw@3.1.2:')
depends_on('gsl@1.15:')