r-diversitree: new package (#9893)
* r-diversitree: new package * r-diversitree: system reqs
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var/spack/repos/builtin/packages/r-diversitree/package.py
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var/spack/repos/builtin/packages/r-diversitree/package.py
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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RDiversitree(RPackage):
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"""Contains a number of comparative 'phylogenetic' methods.
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Mostly focusing on analysing diversification and character
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evolution. Contains implementations of 'BiSSE' (Binary State
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'Speciation' and Extinction) and its unresolved tree extensions,
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'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
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'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
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models of discrete and continuous trait evolution and constant
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rate 'speciation' and extinction."""
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homepage = "http://www.zoology.ubc.ca/prog/diversitree"
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url = "https://cran.r-project.org/src/contrib/diversitree_0.9-10.tar.gz"
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list_url = "https://cron.r-project.org/src/contrib/Archive/diversitree"
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version('0.9-10', sha256='e7df5910c8508a5c2c2d6d3deea53dd3f947bb762196901094c32a7033cb043e')
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depends_on('r@2.1.0:', type=('build', 'run'))
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depends_on('r-ape', type=('build', 'run'))
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depends_on('r-desolve@1.7:', type=('build', 'run'))
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depends_on('r-subplex', type=('build', 'run'))
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depends_on('r-rcpp@0.10.0:', type=('build', 'run'))
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depends_on('fftw@3.1.2:')
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depends_on('gsl@1.15:')
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