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breseq package: Add version 0.33.2 and zlib dependency (#10747)

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For zlib, also update the `CFLAGS`/`LDFLAGS`
This commit is contained in:
Eric Martin 2019-03-08 20:57:00 -06:00 committed by Peter Scheibel
parent c81e68030a
commit 43b45f4140
1 changed files with 10 additions and 2 deletions
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12
var/spack/repos/builtin/packages/breseq/package.py
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@ -7,13 +7,14 @@
class Breseq(AutotoolsPackage):
"""breseq is a computational pipeline for finding mutations relative to a
reference sequence in short-read DNA re-sequencing data for haploid
"""breseq is a computational pipeline for finding mutations relative to
a reference sequence in short-read DNA re-sequencing data for haploid
microbial-sized genomes."""
homepage = "http://barricklab.org/breseq"
url = "https://github.com/barricklab/breseq/archive/v0.31.1.tar.gz"
version('0.33.2', sha256='c698d2d25cc7ed251ff916343a8c04f79b5540281288cb7c955f458255ac21de')
version('0.33.1', sha256='e24a50e254ad026c519747313b9e42bbeb32bd766a6a06ed369bd5b9dc50e84d')
version('0.31.1', 'a4e602d5481f8692833ba3d5a3cd0394')
@ -21,6 +22,13 @@ class Breseq(AutotoolsPackage):
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('zlib', type='build')
depends_on('bedtools2', type='run')
depends_on('r', type='run')
def setup_environment(self, spack_env, run_env):
spack_env.set('LDFLAGS',
"-L{0}".format(self.spec['zlib'].prefix.lib))
spack_env.set('CFLAGS',
"-I{0}".format(self.spec['zlib'].prefix.include))