zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

kallisto: add version 0.50.1 (#44544)

Browse Source 
Signed-off-by: Shane Nehring <snehring@iastate.edu>
This commit is contained in:
snehring 2024-06-04 12:21:54 -05:00 committed by GitHub
parent 8dbf9005f0
commit 4442414d74
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 5 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
var/spack/repos/builtin/packages/kallisto/package.py
View File

@ -15,12 +15,14 @@ class Kallisto(CMakePackage):
license("BSD-2-Clause")
version("0.50.1", sha256="030752bab3b0e33cd3f23f6d8feddd74194e5513532ffbf23519e84db2a86d34")
version("0.48.0", sha256="1797ac4d1f0771e3f1f25dd7972bded735fcb43f853cf52184d3d9353a6269b0")
version("0.46.2", sha256="c447ca8ddc40fcbd7d877d7c868bc8b72807aa8823a8a8d659e19bdd515baaf2")
version("0.43.1", sha256="7baef1b3b67bcf81dc7c604db2ef30f5520b48d532bf28ec26331cb60ce69400")
# HDF5 support is optional beginning with version 0.46.2.
variant("hdf5", when="@0.46.2:", default=False, description="Build with HDF5 support")
variant("bam", when="@0.50.1:", default=False, description="Build with htslib support")
depends_on("zlib-api")
depends_on("hdf5", when="@:0.43")
@ -38,7 +40,7 @@ class Kallisto(CMakePackage):
patch("link_zlib.patch", when="@:0.43")
patch("limits.patch", when="@:0.46")
patch("htslib_configure.patch", when="@0.44.0:^autoconf@2.70:")
patch("htslib_configure.patch", when="@0.44.0:0.48.0^autoconf@2.70:")
@run_before("cmake")
def autoreconf(self):
@ -64,6 +66,8 @@ def std_cmake_args(self):
args = [i for i in a if i != "-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON"]
if self.spec.satisfies("@0.46.2:"):
args.append(self.define_from_variant("USE_HDF5", "hdf5"))
if self.spec.satisifes("@0.50.1:"):
args.append(self.define_from_variant("USE_BAM", "bam"))
else:
args = a