pbsuite: new package at 15.8.24 (#10059)

var/spack/repos/builtin/packages/pbsuite/package.py

@@ -0,0 +1,28 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Pbsuite(Package):
+    """PBJelly is a highly automated pipeline that aligns long sequencing
+       reads (such as PacBio RS reads or long 454 reads in fasta format)
+       to high-confidence draft assembles."""
+
+    homepage = "https://sourceforge.net/p/pb-jelly/wiki/Home/"
+    url      = "https://downloads.sourceforge.net/project/pb-jelly/PBSuite_15.8.24.tgz"
+
+    version('15.8.24', sha256='1be082faa62cb3f701c78498db8544c844c3d6d3e3524fecf00a12e82a97e12b')
+
+    depends_on('blasr@1.3.1:', type='run')
+    depends_on('python@2.7:', type='run')
+    depends_on('py-networkx@1.1:', type='run')
+
+    def install(self, spec, prefix):
+        install_tree('pbsuite', prefix.pbsuite)
+        install_tree('bin', prefix.bin)
+
+    def setup_environment(self, spack_env, run_env):
+        run_env.set('PYTHONPATH', self.prefix)