Add hdf5 versions 1.14.0, develop-1.14 and update develop version from develop-1.13 to develop-1.15 (#34734)

* Add HDF5 version 1.13.3.

* Remove maintainers no longer with The HDFGroup.

* Add version hdf5-vol-async@1.4

* Add HDF5 version 1.14.0, develop-1.14, develop-1.15.
Add missing conflicts for api version and develop versions.

* Add conflicts statement to hdf5/package.py to avoid building hdf5 with
MPICH 4.0.x versions with bug that causes testphdf5 test to fail.

* Add patch to call find_package(MPI) for dependent packages not finding
it, not having called it themselves.

* Remove language components from find_package(MPI) in
hdf5_1_14_0_config_find_mpi.patch.

* Add HDF5 version 1.14.0, develop-1.14, develop-1.15.
Add missing conflicts for api version and develop versions.

* Add conflicts statement to hdf5/package.py to avoid building hdf5 with
MPICH 4.0.x versions with bug that causes testphdf5 test to fail.

* Add patch to call find_package(MPI) for dependent packages not finding
it, not having called it themselves.

* Remove language components from find_package(MPI) in
hdf5_1_14_0_config_find_mpi.patch.

* Don't guard ParaView patch on HDF5 variant

ParaView always needsd  HDF5 and ignores the variant.

* py-h5py: Newer versions of HDF5 introduce breaking API changes

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>

var/spack/repos/builtin/packages/hdf5/hdf5_1_14_0_config_find_mpi.patch

@@ -0,0 +1,13 @@
+diff --git a/config/cmake/hdf5-config.cmake.in b/config/cmake/hdf5-config.cmake.in
+index 35cee4f..b336377 100644
+--- a/config/cmake/hdf5-config.cmake.in
++++ b/config/cmake/hdf5-config.cmake.in
+@@ -63,6 +63,8 @@ if (${HDF5_PACKAGE_NAME}_ENABLE_PARALLEL)
+     set (${HDF5_PACKAGE_NAME}_MPI_Fortran_INCLUDE_PATH "@MPI_Fortran_INCLUDE_DIRS@")
+     set (${HDF5_PACKAGE_NAME}_MPI_Fortran_LIBRARIES    "@MPI_Fortran_LIBRARIES@")
+   endif ()
++
++    find_package(MPI QUIET REQUIRED)
+ endif ()
+ 
+ if (${HDF5_PACKAGE_NAME}_BUILD_JAVA)

var/spack/repos/builtin/packages/hdf5/package.py

@@ -39,7 +39,8 @@ class Hdf5(CMakePackage):
 
     # The 'develop' version is renamed so that we could uninstall (or patch) it
     # without affecting other develop version.
-    version("develop-1.13", branch="develop")
+    version("develop-1.15", branch="develop")
+    version("develop-1.14", branch="hdf5_1_14")
     version("develop-1.12", branch="hdf5_1_12")
     version("develop-1.10", branch="hdf5_1_10")
     version("develop-1.8", branch="hdf5_1_8")
@@ -49,6 +50,11 @@ class Hdf5(CMakePackage):
     version("1.13.2", sha256="01643fa5b37dba7be7c4db6bbf3c5d07adf5c1fa17dbfaaa632a279b1b2f06da")
 
     # Even versions are maintenance versions
+    version(
+        "1.14.0",
+        sha256="a571cc83efda62e1a51a0a912dd916d01895801c5025af91669484a1575a6ef4",
+        preferred=True,
+    )
     version(
         "1.12.2",
         sha256="2a89af03d56ce7502dcae18232c241281ad1773561ec00c0f0e8ee2463910f14",
@@ -190,7 +196,7 @@ class Hdf5(CMakePackage):
         "api",
         default="default",
         description="Choose api compatibility for earlier version",
-        values=("default", "v114", "v112", "v110", "v18", "v16"),
+        values=("default", "v116", "v114", "v112", "v110", "v18", "v16"),
         multi=False,
     )
 
@@ -207,10 +213,28 @@ class Hdf5(CMakePackage):
     for plat in ["cray", "darwin", "linux"]:
         depends_on("pkgconfig", when="platform=%s" % plat, type="run")
 
+    conflicts("+mpi", "^mpich@4.0:4.0.3")
+    conflicts("api=v116", when="@1.6:1.14", msg="v116 is not compatible with this release")
+    conflicts(
+        "api=v116",
+        when="@develop-1.8:develop-1.14",
+        msg="v116 is not compatible with this release",
+    )
     conflicts("api=v114", when="@1.6:1.12", msg="v114 is not compatible with this release")
+    conflicts(
+        "api=v114",
+        when="@develop-1.8:develop-1.12",
+        msg="v114 is not compatible with this release",
+    )
     conflicts("api=v112", when="@1.6:1.10", msg="v112 is not compatible with this release")
+    conflicts(
+        "api=v112",
+        when="@develop-1.8:develop-1.10",
+        msg="v112 is not compatible with this release",
+    )
     conflicts("api=v110", when="@1.6:1.8", msg="v110 is not compatible with this release")
-    conflicts("api=v18", when="@1.6.0:1.6", msg="v18 is not compatible with this release")
+    conflicts("api=v110", when="@develop-1.8", msg="v110 is not compatible with this release")
+    conflicts("api=v18", when="@1.6", msg="v18 is not compatible with this release")
 
     # The Java wrappers cannot be built without shared libs.
     conflicts("+java", when="~shared")
@@ -287,6 +311,13 @@ class Hdf5(CMakePackage):
     # See https://github.com/HDFGroup/hdf5/issues/1157
     patch("fortran-kinds-2.patch", when="@1.10.8,1.12.1")
 
+    # Patch needed for HDF5 1.14.0 where dependency on MPI::MPI_C was declared
+    # PUBLIC.  Dependent packages using the default hdf5 package but not
+    # expecting to use MPI then failed to configure because they did not call
+    # find_package(MPI).  This patch does that for them.  Later HDF5 versions
+    # will include the patch code changes.
+    patch("hdf5_1_14_0_config_find_mpi.patch", when="@1.14.0")
+
     # The argument 'buf_size' of the C function 'h5fget_file_image_c' is
     # declared as intent(in) though it is modified by the invocation. As a
     # result, aggressive compilers such as Fujitsu's may do a wrong
@@ -576,14 +607,14 @@ def cmake_args(self):
         if api != "default":
             args.append(self.define("DEFAULT_API_VERSION", api))
 
-        if "+mpi" in spec and "platform=windows" not in spec:
+        if "+mpi" in spec:
-            args.append(self.define("CMAKE_C_COMPILER", spec["mpi"].mpicc))
+            args.extend(
-
+                [
-            if "+cxx" in self.spec:
+                    "-DMPI_CXX_COMPILER:PATH=%s" % spec["mpi"].mpicxx,
-                args.append(self.define("CMAKE_CXX_COMPILER", spec["mpi"].mpicxx))
+                    "-DMPI_C_COMPILER:PATH=%s" % spec["mpi"].mpicc,
-
+                    "-DMPI_Fortran_COMPILER:PATH=%s" % spec["mpi"].mpifc,
-            if "+fortran" in self.spec:
+                ]
-                args.append(self.define("CMAKE_Fortran_COMPILER", spec["mpi"].mpifc))
+            )
 
         # work-around for https://github.com/HDFGroup/hdf5/issues/1320
         if spec.satisfies("@1.10.8,1.13.0"):

var/spack/repos/builtin/packages/paraview/package.py

@@ -270,8 +270,8 @@ class Paraview(CMakePackage, CudaPackage, ROCmPackage):
 
     # Patch for paraview 5.10: +hdf5 ^hdf5@1.13.2:
     # https://gitlab.kitware.com/vtk/vtk/-/merge_requests/9690
-    patch("vtk-xdmf2-hdf51.13.1.patch", when="@5.10.0:5.10 +hdf5")
+    patch("vtk-xdmf2-hdf51.13.1.patch", when="@5.10.0:5.10")
-    patch("vtk-xdmf2-hdf51.13.2.patch", when="@5.10: +hdf5")
+    patch("vtk-xdmf2-hdf51.13.2.patch", when="@5.10:")
 
     @property
     def generator(self):

var/spack/repos/builtin/packages/py-h5py/package.py

@@ -61,7 +61,7 @@ class PyH5py(PythonPackage):
     # Link dependencies (py-h5py v2 cannot build against HDF5 1.12 regardless
     # of API setting)
     depends_on("hdf5@1.8.4:1.11 +hl", when="@:2")
-    depends_on("hdf5@1.8.4: +hl", when="@3:")
+    depends_on("hdf5@1.8.4:1.12 +hl", when="@3:")
 
     # MPI dependencies
     depends_on("hdf5+mpi", when="+mpi")