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Package/py phylophlan (#31422)

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* py-phylophlan: new package

* py-phyloseq: new package

* py-phylophlan: style fix

* py-phylophlan: fixed dependencies

* py-phylophlan: style fix
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Erin Newcomer 2022-07-07 16:06:55 -05:00 committed by GitHub
parent a12ce9fd59
commit 44b48cfe46
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var/spack/repos/builtin/packages/py-phylophlan/package.py Normal file
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyPhylophlan(PythonPackage):
"""PhyloPhlAn 3.0 is an integrated pipeline for large-scale
phylogenetic profiling of genomes and metagenomes."""
homepage = "https://github.com/biobakery/phylophlan"
url = "https://github.com/biobakery/phylophlan/archive/refs/tags/3.0.2.tar.gz"
version('3.0.2', sha256='c342116662bbfbb49f0665291fc7c0be5a0d04a02a7be2da81de0322eb2256b4')
depends_on('python@3:', type=('build', 'run'))
depends_on('py-numpy@1.12.1:', type=('build', 'run'))
depends_on('py-biopython@1.70:', type=('build', 'run'))
depends_on('py-dendropy@4.2.0:', type=('build', 'run'))
depends_on('muscle', type=('build', 'run'))
depends_on('blast-plus', type=('build', 'run'))
depends_on('diamond', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-seaborn', type=('build', 'run'))