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bracken: Use correct python command (#13395)

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python~pythoncmd does not provide a python symlink for python3, so make
sure we pick the right command.
This commit is contained in:
Michael Kuhn 2019-10-23 16:33:09 +02:00 committed by Adam J. Stewart
parent 44f859849b
commit 466d07558d
1 changed files with 7 additions and 4 deletions
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11
var/spack/repos/builtin/packages/bracken/package.py
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@ -4,6 +4,7 @@
# SPDX-License-Identifier: (Apache-2.0 OR MIT) # SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import * from spack import *
import os
class Bracken(Package): class Bracken(Package):
@ -16,8 +17,8 @@ class Bracken(Package):
version('1.0.0', sha256='8ee736535ad994588339d94d0db4c0b1ba554a619f5f96332ee09f2aabdfe176') version('1.0.0', sha256='8ee736535ad994588339d94d0db4c0b1ba554a619f5f96332ee09f2aabdfe176')
depends_on('perl') depends_on('perl', type=('build', 'link', 'run'))
depends_on('python@2.7:') depends_on('python@2.7:', type=('build', 'link', 'run'))
depends_on('perl-exporter-tiny') depends_on('perl-exporter-tiny')
depends_on('perl-list-moreutils') depends_on('perl-list-moreutils')
depends_on('perl-parallel-forkmanager') depends_on('perl-parallel-forkmanager')
@ -34,13 +35,15 @@ def install(self, spec, prefix):
filter_file( filter_file(
r'#!/usr/bin/python', r'#!/usr/bin/python',
'#!/usr/bin/env python', '#!/usr/bin/env {0}'.format(
os.path.basename(self.spec['python'].command.path)),
'est_abundance.py' 'est_abundance.py'
) )
filter_file( filter_file(
r'#!/usr/bin/python', r'#!/usr/bin/python',
'#!/usr/bin/env python', '#!/usr/bin/env {0}'.format(
os.path.basename(self.spec['python'].command.path)),
'generate_kmer_distribution.py' 'generate_kmer_distribution.py'
) )