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ldsc: new package @2.0.1 (#42430)

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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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George Young 2024-02-04 12:06:45 +00:00 committed by GitHub
parent 6c57360eac
commit 47c91c9163
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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Ldsc(PythonPackage):
"""ldsc is a command line tool for estimating heritability and genetic correlation from
GWAS summary statistics. ldsc also computes LD scores"""
homepage = "http://github.com/bulik/ldsc"
pypi = "ldsc/ldsc-2.0.1.tar.gz"
license("GPL-3.0-only", checked_by="A-N-Other")
version("2.0.1", sha256="fe72f99da8a26414d82e47f2d2ee7cebbbab6c20d1b4ea51a0c38cc650c63556")
depends_on("py-setuptools", type="build")
depends_on("py-bitarray@2.6.0:", type=("build", "run"))
depends_on("py-pybedtools@0.9.0:", type=("build", "run"))
depends_on("py-scipy@1.9.2:", type=("build", "run"))
depends_on("py-numpy@1.23.3:", type=("build", "run"))
depends_on("py-pandas@1.5.0:", type=("build", "run"))