e4s cray rhel ci stack: re-enable and update for new cpe (#47697)
* e4s cray rhel ci stack: re-enable and update for new cpe, should fix cray libsci issue * only run e4s-cray-rhel stack * Mkae Autotools build_system point at correct build_directory * remove selective enable of cray-rhel stacks * restore SPACK_CI_DISABLE_STACKS * use dot prefix to hide cray-sles jobs instead of comment-out --------- Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
This commit is contained in:
eugeneswalker
Harmen Stoppels
parent
6f7e881b69
commit
4a8ae59a9e
@ -14,10 +14,10 @@ default:
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image: { "name": "ghcr.io/spack/e4s-ubuntu-18.04:v2021-10-18", "entrypoint": [""] }
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# CI Platform-Arch
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.cray_rhel_zen4:
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.cray_rhel_x86_64_v3:
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variables:
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SPACK_TARGET_PLATFORM: "cray-rhel"
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SPACK_TARGET_ARCH: "zen4"
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SPACK_TARGET_ARCH: "x86_64_v3"
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.cray_sles_zen4:
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variables:
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@ -876,7 +876,7 @@ aws-pcluster-build-neoverse_v1:
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- cat /proc/meminfo | grep 'MemTotal\|MemFree' || true
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.generate-cray-rhel:
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tags: [ "cray-rhel-zen4", "public" ]
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tags: [ "cray-rhel-x86_64_v3", "public" ]
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extends: [ ".generate-cray" ]
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.generate-cray-sles:
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@ -888,7 +888,7 @@ aws-pcluster-build-neoverse_v1:
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# E4S - Cray RHEL
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#######################################
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.e4s-cray-rhel:
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extends: [ ".cray_rhel_zen4" ]
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extends: [ ".cray_rhel_x86_64_v3" ]
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variables:
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SPACK_CI_STACK_NAME: e4s-cray-rhel
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@ -896,7 +896,6 @@ e4s-cray-rhel-generate:
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extends: [ ".generate-cray-rhel", ".e4s-cray-rhel" ]
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e4s-cray-rhel-build:
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allow_failure: true # libsci_cray.so broken, misses DT_NEEDED for libdl.so
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extends: [ ".build", ".e4s-cray-rhel" ]
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trigger:
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include:
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@ -915,10 +914,10 @@ e4s-cray-rhel-build:
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variables:
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SPACK_CI_STACK_NAME: e4s-cray-sles
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e4s-cray-sles-generate:
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.e4s-cray-sles-generate:
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extends: [ ".generate-cray-sles", ".e4s-cray-sles" ]
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e4s-cray-sles-build:
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.e4s-cray-sles-build:
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allow_failure: true # libsci_cray.so broken, misses DT_NEEDED for libdl.so
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extends: [ ".build", ".e4s-cray-sles" ]
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trigger:
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@ -1,31 +1,27 @@
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compilers:
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- compiler:
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spec: cce@15.0.1
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spec: cce@=18.0.0
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paths:
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cc: cc
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cxx: CC
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f77: ftn
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fc: ftn
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cc: /opt/cray/pe/cce/18.0.0/bin/craycc
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cxx: /opt/cray/pe/cce/18.0.0/bin/crayCC
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f77: /opt/cray/pe/cce/18.0.0/bin/crayftn
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fc: /opt/cray/pe/cce/18.0.0/bin/crayftn
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flags: {}
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operating_system: rhel8
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target: any
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modules:
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- PrgEnv-cray/8.3.3
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- cce/15.0.1
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environment:
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set:
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MACHTYPE: x86_64
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- compiler:
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spec: gcc@11.2.0
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paths:
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cc: gcc
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cxx: g++
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f77: gfortran
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fc: gfortran
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flags: {}
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operating_system: rhel8
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target: any
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modules:
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- PrgEnv-gnu
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- gcc/11.2.0
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target: x86_64
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modules: []
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environment: {}
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extra_rpaths: []
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- compiler:
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spec: gcc@=8.5.0
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paths:
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cc: /usr/bin/gcc
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cxx: /usr/bin/g++
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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flags: {}
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operating_system: rhel8
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target: x86_64
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modules: []
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environment: {}
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extra_rpaths: []
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@ -1,16 +1,15 @@
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packages:
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# EXTERNALS
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cray-mpich:
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buildable: false
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externals:
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- spec: cray-mpich@8.1.25 %cce@15.0.1
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prefix: /opt/cray/pe/mpich/8.1.25/ofi/cray/10.0
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- spec: cray-mpich@8.1.30 %cce
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prefix: /opt/cray/pe/mpich/8.1.30/ofi/cray/18.0
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modules:
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- cray-mpich/8.1.25
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- cray-mpich/8.1.30
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cray-libsci:
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buildable: false
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externals:
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- spec: cray-libsci@23.02.1.1 %cce@15.0.1
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prefix: /opt/cray/pe/libsci/23.02.1.1/CRAY/9.0/x86_64/
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- spec: cray-libsci@24.07.0 %cce
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prefix: /opt/cray/pe/libsci/24.07.0/CRAY/18.0/x86_64/
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modules:
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- cray-libsci/23.02.1.1
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- cray-libsci/24.07.0
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@ -0,0 +1,4 @@
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ci:
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pipeline-gen:
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- build-job:
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tags: ["cray-rhel-x86_64_v3"]
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@ -1,4 +0,0 @@
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ci:
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pipeline-gen:
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- build-job:
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tags: ["cray-rhel-zen4"]
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@ -10,8 +10,7 @@ spack:
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packages:
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all:
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prefer:
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- "%cce"
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require: "%cce@18.0.0 target=x86_64_v3"
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compiler: [cce]
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providers:
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blas: [cray-libsci]
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@ -19,17 +18,15 @@ spack:
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mpi: [cray-mpich]
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tbb: [intel-tbb]
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scalapack: [netlib-scalapack]
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target: [zen4]
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variants: +mpi
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ncurses:
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require: +termlib ldflags=-Wl,--undefined-version
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tbb:
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require: "intel-tbb"
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binutils:
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variants: +ld +gold +headers +libiberty ~nls
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boost:
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variants: +python +filesystem +iostreams +system
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cuda:
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version: [11.7.0]
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elfutils:
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variants: ~nls
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require: "%gcc"
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@ -39,20 +36,14 @@ spack:
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variants: +fortran +hl +shared
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libfabric:
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variants: fabrics=sockets,tcp,udp,rxm
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libunwind:
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variants: +pic +xz
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mgard:
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require:
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- "@2023-01-10:"
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mpich:
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variants: ~wrapperrpath
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ncurses:
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variants: +termlib
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paraview:
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# Don't build GUI support or GLX rendering for HPC/container deployments
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require: "@5.11 ~qt ^[virtuals=gl] osmesa"
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python:
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version: [3.8.13]
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require: "~qt ^[virtuals=gl] osmesa"
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trilinos:
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require:
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- one_of: [+amesos +amesos2 +anasazi +aztec +boost +epetra +epetraext +ifpack
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@ -63,12 +54,6 @@ spack:
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- one_of: [~ml ~muelu ~zoltan2 ~teko, +ml +muelu +zoltan2 +teko]
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- one_of: [+superlu-dist, ~superlu-dist]
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- one_of: [+shylu, ~shylu]
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xz:
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variants: +pic
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mesa:
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version: [21.3.8]
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unzip:
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require: "%gcc"
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specs:
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# CPU
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@ -76,62 +61,43 @@ spack:
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- aml
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- arborx
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- argobots
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- bolt
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- butterflypack
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- boost +python +filesystem +iostreams +system
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- cabana
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- caliper
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- chai
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- charliecloud
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- conduit
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# - cp2k +mpi # libxsmm: ftn-78 ftn: ERROR in command linel; The -f option has an invalid argument, "tree-vectorize".
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- datatransferkit
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- flecsi
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- flit
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- flux-core
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- fortrilinos
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- ginkgo
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- globalarrays
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- gmp
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- gotcha
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- h5bench
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- hdf5-vol-async
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- hdf5-vol-cache
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- hdf5-vol-cache cflags=-Wno-error=incompatible-function-pointer-types
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- hdf5-vol-log
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- heffte +fftw
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- hpx max_cpu_count=512 networking=mpi
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- hypre
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- kokkos +openmp
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- kokkos-kernels +openmp
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- lammps
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- legion
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- libnrm
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#- libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp +json +remote +netcdf +mgard # mgard:
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- libquo
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- libunwind
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- mercury
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- metall
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- mfem
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# - mgard +serial +openmp +timing +unstructured ~cuda # mgard
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- mpark-variant
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- mpifileutils ~xattr
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- mpifileutils ~xattr cflags=-Wno-error=implicit-function-declaration
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- nccmp
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- nco
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- netlib-scalapack
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- omega-h
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- openmpi
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- netlib-scalapack cflags=-Wno-error=implicit-function-declaration
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- openpmd-api ^adios2~mgard
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- papi
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- papyrus
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- pdt
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- petsc
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- plumed
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- precice
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- pumi
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- py-h5py +mpi
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- py-h5py ~mpi
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- py-libensemble +mpi +nlopt
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- py-petsc4py
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- qthreads scheduler=distrib
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- raja
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- slate ~cuda
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@ -144,8 +110,7 @@ spack:
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- swig@4.0.2-fortran
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- sz3
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- tasmanian
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- tau +mpi +python
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- trilinos@13.0.1 +belos +ifpack2 +stokhos
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- trilinos +belos +ifpack2 +stokhos
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- turbine
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- umap
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- umpire
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@ -155,27 +120,47 @@ spack:
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# - alquimia # pflotran: petsc-3.19.4-c6pmpdtpzarytxo434zf76jqdkhdyn37/lib/petsc/conf/rules:169: material_aux.o] Error 1: fortran errors
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# - amrex # disabled temporarily pending resolution of unreproducible CI failure
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# - axom # axom: CMake Error at axom/sidre/cmake_install.cmake:154 (file): file INSTALL cannot find "/tmp/gitlab-runner-2/spack-stage/spack-stage-axom-0.8.1-jvol6riu34vuyqvrd5ft2gyhrxdqvf63/spack-build-jvol6ri/lib/fortran/axom_spio.mod": No such file or directory.
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# - bolt # ld.lld: error: CMakeFiles/bolt-omp.dir/kmp_gsupport.cpp.o: symbol GOMP_atomic_end@@GOMP_1.0 has undefined version GOMP_1.0
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# - bricks # bricks: clang-15: error: clang frontend command failed with exit code 134 (use -v to see invocation)
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# - butterflypack ^netlib-scalapack cflags=-Wno-error=implicit-function-declaration # ftn-2116 ftn: INTERNAL "driver" was terminated due to receipt of signal 01: Hangup.
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# - caliper # papi: papi_internal.c:124:3: error: use of undeclared identifier '_papi_hwi_my_thread'; did you mean '_papi_hwi_read'?
|
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# - charliecloud # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
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# - cp2k +mpi # libxsmm: ftn-78 ftn: ERROR in command linel; The -f option has an invalid argument, "tree-vectorize".
|
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# - dealii # llvm@14.0.6: ?; intel-tbb@2020.3: clang-15: error: unknown argument: '-flifetime-dse=1'; assimp@5.2.5: clang-15: error: clang frontend command failed with exit code 134 (use -v to see invocation)
|
||||
# - dyninst # requires %gcc
|
||||
# - ecp-data-vis-sdk ~cuda ~rocm +adios2 +ascent +cinema +darshan +faodel +hdf5 +paraview +pnetcdf +sz +unifyfs +veloc ~visit +vtkm +zfp ^hdf5@1.14 # llvm@14.0.6: ?;
|
||||
# - exaworks # rust: ld.lld: error: relocation R_X86_64_32 cannot be used against local symbol; recompile with -fPIC'; defined in /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o, referenced by /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o:(__no_mmap_for_malloc)
|
||||
# - flux-core # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
||||
# - fortrilinos # trilinos-14.0.0: packages/teuchos/core/src/Teuchos_BigUIntDecl.hpp:67:8: error: no type named 'uint32_t' in namespace 'std'
|
||||
# - gasnet # configure error: User requested --enable-ofi but I don't know how to build ofi programs for your system
|
||||
# - gptune # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
|
||||
# - hpctoolkit # dyninst requires %gcc
|
||||
# - hpx max_cpu_count=512 networking=mpi # libxcrypt-4.4.35
|
||||
# - lammps # lammps-20240829.1: Reversed (or previously applied) patch detected! Assume -R? [n]
|
||||
# - libpressio +bitgrooming +bzip2 ~cuda ~cusz +fpzip +hdf5 +libdistributed +lua +openmp +python +sz +sz3 +unix +zfp +json +remote +netcdf +mgard # mgard:
|
||||
# - mgard +serial +openmp +timing +unstructured ~cuda # mgard
|
||||
# - nrm # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
|
||||
# - nvhpc # requires %gcc
|
||||
# - omega-h # trilinos-13.4.1: packages/kokkos/core/src/impl/Kokkos_MemoryPool.cpp:112:48: error: unknown type name 'uint32_t'
|
||||
# - openmpi # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
||||
# - papi # papi_internal.c:124:3: error: use of undeclared identifier '_papi_hwi_my_thread'; did you mean '_papi_hwi_read'?
|
||||
# - parsec ~cuda # parsec: parsec/fortran/CMakeFiles/parsec_fortran.dir/parsecf.F90.o: ftn-2103 ftn: WARNING in command line. The -W extra option is not supported or invalid and will be ignored.
|
||||
# - phist # fortran_bindings/CMakeFiles/phist_fort.dir/phist_testing.F90.o: ftn-78 ftn: ERROR in command line. The -f option has an invalid argument, "no-math-errno".
|
||||
# - plasma # %cce conflict
|
||||
# - plumed # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
||||
# - py-h5py +mpi # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
||||
# - py-h5py ~mpi # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
||||
# - py-jupyterhub # rust: ld.lld: error: relocation R_X86_64_32 cannot be used against local symbol; recompile with -fPIC'; defined in /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o, referenced by /opt/cray/pe/cce/15.0.1/cce/x86_64/lib/no_mmap.o:(__no_mmap_for_malloc)
|
||||
# - py-libensemble +mpi +nlopt # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
||||
# - py-petsc4py # libxcrypt-4.4.35: ld.lld: error: version script assignment of 'XCRYPT_2.0' to symbol 'xcrypt_r' failed: symbol not defined
|
||||
# - quantum-espresso # quantum-espresso: CMake Error at cmake/FindSCALAPACK.cmake:503 (message): A required library with SCALAPACK API not found. Please specify library
|
||||
# - scr # scr: make[2]: *** [examples/CMakeFiles/test_ckpt_F.dir/build.make:112: examples/test_ckpt_F] Error 1: /opt/cray/pe/cce/15.0.1/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: /opt/cray/pe/mpich/8.1.25/ofi/cray/10.0/lib/libmpi_cray.so: undefined reference to `PMI_Barrier'
|
||||
# - strumpack ~slate # strumpack: [test/CMakeFiles/test_HSS_seq.dir/build.make:117: test/test_HSS_seq] Error 1: ld.lld: error: undefined reference due to --no-allow-shlib-undefined: mpi_abort_
|
||||
# - tau +mpi +python # libelf: configure: error: installation or configuration problem: C compiler cannot create executables.; papi: papi_internal.c:124:3: error: use of undeclared identifier '_papi_hwi_my_thread'; did you mean '_papi_hwi_read'?
|
||||
# - upcxx # upcxx: configure error: User requested --enable-ofi but I don't know how to build ofi programs for your system
|
||||
# - variorum # variorum: /opt/cray/pe/cce/15.0.1/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: /opt/cray/pe/lib64/libpals.so.0: undefined reference to `json_array_append_new@@libjansson.so.4'
|
||||
# - xyce +mpi +shared +pymi +pymi_static_tpls ^trilinos~shylu # openblas: ftn-2307 ftn: ERROR in command line: The "-m" option must be followed by 0, 1, 2, 3 or 4.; make[2]: *** [<builtin>: spotrf2.o] Error 1; make[1]: *** [Makefile:27: lapacklib] Error 2; make: *** [Makefile:250: netlib] Error 2
|
||||
# - warpx +python # py-scipy: meson.build:82:0: ERROR: Unknown compiler(s): [['/home/gitlab-runner-3/builds/dWfnZWPh/0/spack/spack/lib/spack/env/cce/ftn']]
|
||||
# - xyce +mpi +shared +pymi +pymi_static_tpls ^trilinos~shylu # openblas: ftn-2307 ftn: ERROR in command line: The "-m" option must be followed by 0, 1, 2, 3 or 4.; make[2]: *** [<builtin>: spotrf2.o] Error 1; make[1]: *** [Makefile:27: lapacklib] Error 2; make: *** [Makefile:250: netlib] Error 2
|
||||
|
||||
cdash:
|
||||
build-group: E4S Cray
|
||||
|
||||
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Reference in New Issue
Block a user